LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g4046	ATGGACGCCGGCGAACCTCAATTCCGGCGACAAGCTTCCGGCGAGATGGAACATGATCATGAAGATCCAAATCGAACTGGGTCACGACCCGATTCTGCTTCAGATGGAGCTACCACCTCAGCTAATACCTCCGGAGCTAGATACAAGCTGATGTCTCCGGCGAAGCTCCCGATCTCTAGGTCACCGGTTTTAACAATTCCGCCGGGACTCAGTCCGACTTCATTTCTTGAATCCCCCGTTCTTCTCTCAAATATGAAGGTAGAACCTTCACCCACAACAGGTTCCCTTCCTAGGCTTCAACAAATAGGACATGGTTTTATAACTTCTTCTGCGTCTGCTACACTTCCTGTAACCAGTGGACGCTTCAATAGTAATACTGTTGATGACGGAAAATACAGCTTCTTTGAGTTCAAACCGCACGGTAGATCAAATATGGTTCCTGTTGACTTTCACAACCATGCATGTGAAAAACCTGCTCAAATAGATGGTCAAGGAAAAGTTCAATCTTTTGTTTCACCATTAGTCAAAAGAGAAATAACTGCCCCTTCAGATGAAATAAGTCTATCATCATCACCTGTTCAAATGGTTAGTTCAGGGGCTAGTGCTCATACTGAAGCCAATTTGGACGAATTAAATCCCAGTGGCAACATACCAACTGGGCTTCAAGCATCACAAGTTGATGGTAGGGGCAGTGGACAAGTTGCTGCCGACAAGGCATCCGATGATGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCACGCAGTTATTACAAATGCACACATCCTAACTGTGAAGTGAAGAAACTCTTTGAACGCTCTCATGATGGCCAAATTACCGAAATAGTTTACAAAGGAACACATGATCATCCTAAACCTCAACCAAGCCGTCGATACTCTGGTGGAAATGTTATGTCTGTGCAAGAAGATAGATCTGATAGGGCTTCTTTGACTAGCCGAGACGCTGAGCGTGACAGTACTCCAGAGCTATCGCCTATAGCAACAAATGCTGATAGTCCAGAGGGTGCAGGGTTTTTGTCTAACCGGAGTAATGATGAGGTTGATGAAGACGATCCTTTCTCAAAGCGAAGAAAAATGGATCTTGACATCACTCCTGTAGTTAAGCCTATCCGGGAGCCACGTGTCGTTGTACAAACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGGCAGAAGGTGGTAAGAGGGAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCGGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCAAAAGCTGTAATAACCACATACGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAATAGTCATGATATGGCAGGACCATCAGCTGCAGGTGGACATACAAAAATCCGGCGAGAAGAAAGTGATACTATTAGCCTTGACCTTGGAATGGGCCTTAGCCCAAGAACTGCTGAAAATAGATCAAACAATCAAGGGAGAATGATGCTTACTGAATATGGGGAGAACCAAACTCACAATCACAACAGCAATTCCAGTTTCAAGTTTGTTCATAATACTCCGCCTCCAGTATACTTTGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAATCCGAGTGATAATTCATCTTTAAACCATTCGGCTTATCCTTGCCCACCGAACATGGGAAGAATACTTATGGGTCCGTAA	1749	0.4403	MDAGEPQFRRQASGEMEHDHEDPNRTGSRPDSASDGATTSANTSGARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQIGHGFITSSASATLPVTSGRFNSNTVDDGKYSFFEFKPHGRSNMVPVDFHNHACEKPAQIDGQGKVQSFVSPLVKREITAPSDEISLSSSPVQMVSSGASAHTEANLDELNPSGNIPTGLQASQVDGRGSGQVAADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGNVMSVQEDRSDRASLTSRDAERDSTPELSPIATNADSPEGAGFLSNRSNDEVDEDDPFSKRRKMDLDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPSAAGGHTKIRREESDTISLDLGMGLSPRTAENRSNNQGRMMLTEYGENQTHNHNSNSSFKFVHNTPPPVYFGVLNNNSNPYGSRENPSDNSSLNHSAYPCPPNMGRILMGP*	583

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g4046	582	ProSiteProfiles	WRKY domain profile.	394	459	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tpr3g4046	582	SUPERFAMILY	WRKY DNA-binding domain	391	459	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tpr3g4046	582	MobiDBLite	consensus disorder prediction	1	48	-	-
	Tpr3g4046	582	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	33	562	-	-
	Tpr3g4046	582	MobiDBLite	consensus disorder prediction	319	333	-	-
	Tpr3g4046	582	ProSiteProfiles	WRKY domain profile.	235	299	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tpr3g4046	582	MobiDBLite	consensus disorder prediction	29	47	-	-
	Tpr3g4046	582	Gene3D	WRKY domain	384	460	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tpr3g4046	582	Gene3D	WRKY domain	231	300	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tpr3g4046	582	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	33	562	IPR044810	GO:0003700
	Tpr3g4046	582	MobiDBLite	consensus disorder prediction	290	367	-	-
	Tpr3g4046	582	MobiDBLite	consensus disorder prediction	464	483	-	-
	Tpr3g4046	582	Pfam	WRKY DNA -binding domain	400	456	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tpr3g4046	582	Pfam	WRKY DNA -binding domain	241	297	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tpr3g4046	582	SMART	WRKY_cls	240	298	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tpr3g4046	582	SMART	WRKY_cls	399	458	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tpr3g4046	582	SUPERFAMILY	WRKY DNA-binding domain	239	299	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tpr3g4046	582	MobiDBLite	consensus disorder prediction	11	28	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g4046	Tpr-Chr3	45032559	45039200	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g4046	51	582	WRKY Transcription Factor Family	AT4G26640	54.414	0.0	519

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Tpr3g4046		WRKY	1.4e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g4046	-		-	gmx:100781491	870.922

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr3g4046	3	45032559	45039200	Tpr4g0156	4	1736143	1740553	PCT