Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4003 ATGGAAGAAGAAGATATTGCTAATAATGTTGAAGTTCCACATTCTTCTTCTCAAGTCATGTCATTTAATGGAAAAAGACTAATCATGGATGAAGTTGATTTCTTTGCTCAGAAGAAAATGAGTCCAGTTCATCATGACCAAAGGATGGAGCATCATCACGTAGATACTAGTACTAGTACTTTGGATCTTCTCACAAAGATTTCTCTTTGCAACAAATCAACAATGGATGATGGAGAATATTCCGAAGCAACAATTAGGAACAAAAATGAGTGTGCTGCTTTGGTAGCTGAATTGCACCAAATGAATGTTGAAAATCAACGTTTGAAAGAGCTGGTTGATAAGCTGAGAATTGATTGCAATACCCTAGAAGAGCATGTTCTGCAGTTGAAGCAAAAACAGTATAAACAAGAGATTAATGATGAAGCAACTGAAGATAAGAAAAGGAAAAACATGGTTGAGTTGATGGAGTGTGATAAAAAGACTCATAAGATTTGCAACAATGGAGTTATACAAGAGAAGATGGAGAAGGATGATAATGAGATTCCACAAGCTATGAAAGGATTTCCAGGGTGGCTCTCAAACAATGTTTCAAGGTTGAATTCTTTCAAGGGTGTTGATGATCAAGGAACAGAATCAATGATTAAAAAAGCTCGTGTATCAGTTAGAGCAAGATCAGAAGCTACTATGATTTCAGATGGATGTCAATGGAGAAAATATGGACAGAAGATGGCAAAGGGAAATCCATGTCCAAGGGCTTATTATCGTTGCACAATGGGGACTGCTTGTCCAGTTCGGAAGCAAGTACAAAGGTGTGCTGAAGATAAAACTATATTAGTACAAACATATGAAGGACAACATAACCATGCTCTACCACCAACAGCAAAAGCAATGGCATCAACAACATCAGCAGCAGCATCACTTCTTCTTTCAGGACCATTAACAAGTGCAGATGGTTTAATAAATCCAACAATCTTAGAAAGTGCATCAATCCCTGGTTCACATAACATGGCAACACTTTCAGCTTCAGCACCATTTCCAACTATTACATTAGATCTCACTGAAGAAGCTACTAAAAATTCGTCACAACAAAGTCAATTTAATCTCATTCAACCAATTTTGGCTCAGAAGTTTATGTCATCATTAAATGTTTCTGGAATGGAAAATGCTTCATTTGCTGATACAGTTAGTGCTGCAACTGCTGCTATGACTTCTGATCCGAAATTCACAACTGCTCTTGTTGCTGCCATAACTTCCATCATTGGAAATTCAAATTCAAATAATAATGGTACTGCAAATGGTACAAGTGGAGACCAATAA 1317 0.3698 MEEEDIANNVEVPHSSSQVMSFNGKRLIMDEVDFFAQKKMSPVHHDQRMEHHHVDTSTSTLDLLTKISLCNKSTMDDGEYSEATIRNKNECAALVAELHQMNVENQRLKELVDKLRIDCNTLEEHVLQLKQKQYKQEINDEATEDKKRKNMVELMECDKKTHKICNNGVIQEKMEKDDNEIPQAMKGFPGWLSNNVSRLNSFKGVDDQGTESMIKKARVSVRARSEATMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTACPVRKQVQRCAEDKTILVQTYEGQHNHALPPTAKAMASTTSAAASLLLSGPLTSADGLINPTILESASIPGSHNMATLSASAPFPTITLDLTEEATKNSSQQSQFNLIQPILAQKFMSSLNVSGMENASFADTVSAATAAMTSDPKFTTALVAAITSIIGNSNSNNNGTANGTSGDQ* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4003 438 Coils Coil 91 132 - -
Tpr3g4003 438 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 144 428 - -
Tpr3g4003 438 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 13 144 - -
Tpr3g4003 438 SUPERFAMILY WRKY DNA-binding domain 223 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr3g4003 438 SMART WRKY_cls 230 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr3g4003 438 Pfam WRKY DNA -binding domain 232 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr3g4003 438 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 13 144 IPR044810 GO:0003700
Tpr3g4003 438 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 144 428 IPR044810 GO:0003700
Tpr3g4003 438 Gene3D WRKY domain 215 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr3g4003 438 ProSiteProfiles WRKY domain profile. 225 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4003 Tpr-Chr3 44467159 44472049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4003 26 424 WRKY Transcription Factor Family AT1G62300 41.164 9.84e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr3g4003 WRKY 1.8e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4003 - - cam:101500503 478.404