Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3985 ATGGCTTTTTCCACTGACATCCATCACCTTCCCGACCGATTCCCGGAGGGTTTAAGAGTCTTTATCATTGATCATGACACCACTCAACTTAATGCCATTGCGGATTTGTGCTTTCAATGCAACTATGAAGTTACCACATGCGCTGCGGCTTCTTTTGCCGTGCATCTTTTGAGAGAAACAAAGGGTTCTTTTGATGTGATAGTAATTGAAGCTCAAATGCCGGACATGGATTCGTACGAATTTTTGCAACGTGTTACACAAGAAATCAAAATTCCAATCATAATGATGGGAGTTGATGACACAACAAATGCAAGAATGAAGTCCATTGAAAAAGGGGCATGTGAATATTGGGTTAAACCTTTGAATGTGAATCATATCAACAACATGTGGCAACATGTTGTAACGATTCAAGACCAAGATCAAATTTGTAGAATCTTGGAGGTAAAAACAGGACTAAAAATAATGAAGAGAAATCATGAAACTGCAACAAAAGAAACCAATGCTTATGTTCTTGAAAAATATAGTGATAATGATCATGATCAACCTCCAACAAAGAAGAATCGTTTATCATGGTCAGACCCAAAACTTAAAGAACAATTTCTAAAAGTTGTGAATCAACTTGGCATAGATAAGGCAACGCCAAAACATATTACTAAATTGATGAATGTTCGGGGTTTGACACAAAGCCAGGTTGCTAGCCATTTGCAGAAAGTGAGACTTGGTTTGAAGGGTACAAGTAAAAAGACAAAGTTAAAGAAGGAATTGTCAAAAAGTGGAAAGCATAATCAATACCATGTTCCTAATAATGAAAGCCTTGAAGTTGTTCAATCAATGCCAATGCCAATGCCTGAACAGAATGAAAGTGTTGAAGTTGTTCAGTCAATGCCAATGCCAGAACAGAATGAAAGTGTTGAAGTTGTTCAGTCAATGCCTGCTGCAGAACAGGACCAAAATGTTGTACCGAATTCAGCAAACATACAATGTGATTACAACATTCCTGCACAAGCACAACAGCATGAGAATGTGTTTGATGATTTTGATATTTCCAAATTGTTTACTAACGAAACCAACATGATGGTAGATGGTTCATCATACCTATATGATGAAGCATGGCATTCATCTGAATATGGCACATTTGATTGGTGTTAG 1149 0.3725 MAFSTDIHHLPDRFPEGLRVFIIDHDTTQLNAIADLCFQCNYEVTTCAAASFAVHLLRETKGSFDVIVIEAQMPDMDSYEFLQRVTQEIKIPIIMMGVDDTTNARMKSIEKGACEYWVKPLNVNHINNMWQHVVTIQDQDQICRILEVKTGLKIMKRNHETATKETNAYVLEKYSDNDHDQPPTKKNRLSWSDPKLKEQFLKVVNQLGIDKATPKHITKLMNVRGLTQSQVASHLQKVRLGLKGTSKKTKLKKELSKSGKHNQYHVPNNESLEVVQSMPMPMPEQNESVEVVQSMPMPEQNESVEVVQSMPAAEQDQNVVPNSANIQCDYNIPAQAQQHENVFDDFDISKLFTNETNMMVDGSSYLYDEAWHSSEYGTFDWC* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3985 382 CDD REC_typeB_ARR-like 20 134 - -
Tpr3g3985 382 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 339 IPR045279 GO:0009736
Tpr3g3985 382 SUPERFAMILY Homeodomain-like 184 243 IPR009057 -
Tpr3g3985 382 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 186 240 IPR006447 GO:0003677
Tpr3g3985 382 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Tpr3g3985 382 Gene3D - 14 140 - -
Tpr3g3985 382 SMART REC_2 18 130 IPR001789 GO:0000160
Tpr3g3985 382 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 15 339 - -
Tpr3g3985 382 Gene3D - 183 244 - -
Tpr3g3985 382 SUPERFAMILY CheY-like 16 136 IPR011006 -
Tpr3g3985 382 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3985 Tpr-Chr3 44294281 44295630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3985 12 246 Response Regulator Gene Family AT4G31920 37.872 6.70e-46 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr3g3985 Response_reg 7.4e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3985 - K14491 mtr:MTR_6g045327 234.958