Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3976 ATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCAATGAAACTTGCCGATGATATCACTGGCATGATTTCTGAACATAATTCATTTCCTTCGTCCGGACCAGAAACACAGCGTCATGCATCTGCTATAAGAAGGAAGATCACAATATTGGGGACCAGACTGGATAGCTTGCAATCCCTTTTGTCAAAGGTCCCTGTAAAGTCTGACAAAGAGATGAATCGTCGCAAGGACAATCTTGCAAGTTTGAGGTCAAAGGTTAACCAAATGGCTTCAACGTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGTTTGGGCCTGAAATTAAGCCAGATGCAATGAGCAGAACTGTTGGCTTGGATAATAATGGACTTGTTGGTCTGCAACGGCAAGTTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAAACAGTATTAAGTACAAAACATATTGCATTGGCAGTGAATGAAGAGCTTAGTCTACACACTAGACTCATTGATGACTTGGACGAACATGTAGAGGTTACAGATTCTCGGCTAAGGAGAGTGCAGAAGAACTTGGCAGTTTTAAACAAACGCACCAAAGGTGGTTGCTCGTGCTTGTGCATGCTATTATCAGTGATTGGTATAGTGGTTTTGGTTGTTGTCATATGGCTTCTGGTCAAATATTTGTAG 690 0.413 MASSSDSWMKEYNEAMKLADDITGMISEHNSFPSSGPETQRHASAIRRKITILGTRLDSLQSLLSKVPVKSDKEMNRRKDNLASLRSKVNQMASTLNMSNFANRDSLFGPEIKPDAMSRTVGLDNNGLVGLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELSLHTRLIDDLDEHVEVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVVLVVVIWLLVKYL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3976 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Tpr3g3976 229 SUPERFAMILY SNARE fusion complex 124 194 - -
Tpr3g3976 229 CDD SNARE_Qc 136 193 - -
Tpr3g3976 229 Gene3D - 134 197 - -
Tpr3g3976 229 PANTHER SYNTAXIN 1 223 IPR045242 -
Tpr3g3976 229 Pfam SNARE domain 170 221 IPR000727 -
Tpr3g3976 229 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 223 - -
Tpr3g3976 229 SMART tSNARE_6 128 195 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3976 Tpr-Chr3 44228950 44232237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3976 1 229 SNARE and Associated Proteins AT1G79590 73.391 3.46e-121 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3976 K08503 - gmx:100794038 377.867