Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3950 ATGGGGTTTCCCTACTCTTTTGTGAAGTTGAAACTGTTGAGCAGTTTTGACAATTGTATTCATTCTAACATTGCTGTTGACCAAATTGTTGAGAAATACCAGTCCACTTGCACTCCTCAACCTCCGGTGTCCAAATTTCCTCCTGTTACACCATTTGCAGATAAGGTTAATTTTGCCGGGCAGGGGGATACTTTTTTGCCACCAGAGTTGTGCTTGGATTGCATCCACGGCTACAAGTTAGGGCTATGCCCTGAAGCAGCAAGTCATTTGCAGGAATTTAAGGATAATCTTATTGCTATCTCTAATGAACTGATTGACAATGTTGAAAATCTCAGTTCTGTGCAGATAGCAAAGCTTCGCGAAGACAGGTCACAGCTGAATAAGCAAATTCAACAACTTGAAAAATATATTCATTCCAGTAATCGTGACGAAGAGAGGCAAAAGTCACATTTTGCTACATCTATGGCACCACCTACATCTTTTGTTTATGAAACACCCCAACGAAATGTCATCAGTAGTGGACCAAATAGATATGACGGACAGGCTTATATGGGTAATGGTACATATGAGCCATCATACCAGTCTTCGTATGTCATGCCATCAGGTCCAGTGGAGAGGGAACCATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGATAAACGGTGGAGCAGCCGGGACTTTTCTTGGACTAAAGAGTTAGAGGTTAATAATAAGAGAGTATTTGGAAACCACTCATTTCGCCCCAACCAAAGAGAGGTAATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACCGGTGGAGGAAAAAGTCTGACCTATCAGCTACCAGCTCTCATTAATCCTGGTATAACATTAGTGATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCCGCTGCTTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGATATCCTTAGAGAACTCAATTCTGCTTATTGTAAATACAAGTTGTTATATGTGACACCCGAAAAGGTTGCCAGAAGTGACGTTCTTCTGCGACACTTGGAGAGTTTACACGTTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTGTATTGAAACAGAAATTCCCAAATACTCCCGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAATTTACGGTATTCCGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGATAAATTTATCAGGGAAAATCATTTTGATGAATGTGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGCGGGCATAAATGTGCATTTTATCATGGGAGCATGGATCCTGATCAACGTGCTTTTGTTCAAAGGCAATGGAGCAAAGATGAGATCAATATAATTTGTGCTACCGTGGCATTTGGAATGGGGATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGCGGACGAGCTGGTAGAGATGGTCAGAGTTCCTCCTGTGTCTTGTATTATAGCTACAGTGACTATATCCGAGTTAAGCATATGTTAAGCCTAGGAGCAATAGAGCAAAGCCCAATGCCATCTGGATACAGTCGTTCAAATGCGATAAATTCAGGAAGGATACTGGAAACAAACACTGAAAACCTTTTGCGCATGGTCAGTTATTGTGAAAATGATGTGGACTGTCGGCGCTATATTCAGCTCGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGTGTGAAGGTCACAAGTTTCGTTGAGAAGGATGTCACCGAAATTGCAAAACAATTGGTTGAACTCGTTAAGCTAACGGGACAGAAGGTCTCAGCATCTCATATATTAGAGGTGTATCGTGGTTCCTTAAGCCAGATGGTCAAGAAACACCGACATGAGACTGTGCGTCTTCACGGTGCTGGGAAGCATCTAGCTAAGGGTGAGGCTTCCCGTATATTGCAACATCTTGTTGTTGAGGATTTTCTTGTGGAGGAAGTAAAGAAAAGTGATTTTTATGGATCCGTATCATCTGTATTGAAGGTAAATGAGACAAAGGTCCGTAATGTGTTATTTGGTAGCCAAAGAATTATATTGAGGTTTGTCCTTCCTATCAAATTCCCGTCTTTTGTGAAAGCATCAAAGCCTGGGAAATCTGATATAACTCCAGCCAAAGGTTCTCTGACTTCCGGAAAGCTGAATCTTCCCATTGACATTCCTGACCAACCTCAAACTGAAGTAGACGTGAACCTAGCAGCTAATTTGTACACTGCTCTGAGGATGTTGCGGACAGCTCTTTGTAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGCAATGCTACGTTGCAGCAGATAAGCAAGAGACTACCAAGAACAAAAGAAGAACTTCTTGATATCAATGGCATTAGCAAGACTAAAGTAAGCAAGTATGGGGATCGGTTACTGGAAACAATTGAGAAAACCATAAACGAATTTTACAATACGGATAAAAACAGCAGTGGCAGCAAAGGCAGTGCTGATTCAGCCAAAAGAAGACGAGAGGCAAATAGAGATCCAGATTCAAATGCGGAGGATGATGATGATTCCTTAATCAAAAGTACCGGTCGTTCCAAGAAAAGGACAGTAAGGAGACAAATTAAAAAGGCTGAAATATATGATTCAGAAGAGAAAGATTATTACCATGGATGCCTTGATGAGGACCTAGATTGTATTAATATTGAAGATGAGGCATTAGATAAAATAAATGGTACAGATGCTGCAGGAAGAGTACTACCTCGATGGACAGCATCTTGA 3027 0.4096 MGFPYSFVKLKLLSSFDNCIHSNIAVDQIVEKYQSTCTPQPPVSKFPPVTPFADKVNFAGQGDTFLPPELCLDCIHGYKLGLCPEAASHLQEFKDNLIAISNELIDNVENLSSVQIAKLREDRSQLNKQIQQLEKYIHSSNRDEERQKSHFATSMAPPTSFVYETPQRNVISSGPNRYDGQAYMGNGTYEPSYQSSYVMPSGPVEREPFIPKIIEVNYIEGSGDKRWSSRDFSWTKELEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQDILRELNSAYCKYKLLYVTPEKVARSDVLLRHLESLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPDQRAFVQRQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQSSSCVLYYSYSDYIRVKHMLSLGAIEQSPMPSGYSRSNAINSGRILETNTENLLRMVSYCENDVDCRRYIQLVHFGEKFDSSTCQKTCDNCVKVTSFVEKDVTEIAKQLVELVKLTGQKVSASHILEVYRGSLSQMVKKHRHETVRLHGAGKHLAKGEASRILQHLVVEDFLVEEVKKSDFYGSVSSVLKVNETKVRNVLFGSQRIILRFVLPIKFPSFVKASKPGKSDITPAKGSLTSGKLNLPIDIPDQPQTEVDVNLAANLYTALRMLRTALCREAGEGVMAYHIFGNATLQQISKRLPRTKEELLDINGISKTKVSKYGDRLLETIEKTINEFYNTDKNSSGSKGSADSAKRRREANRDPDSNAEDDDDSLIKSTGRSKKRTVRRQIKKAEIYDSEEKDYYHGCLDEDLDCINIEDEALDKINGTDAAGRVLPRWTAS* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3950 1008 Pfam RQC domain 664 776 IPR018982 GO:0006260|GO:0006281|GO:0043138
Tpr3g3950 1008 Gene3D - 442 661 IPR027417 -
Tpr3g3950 1008 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 459 604 IPR001650 -
Tpr3g3950 1008 Pfam DEAD/DEAH box helicase 253 421 IPR011545 GO:0003676|GO:0005524
Tpr3g3950 1008 SUPERFAMILY HRDC-like 828 900 IPR010997 GO:0000166|GO:0044237
Tpr3g3950 1008 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 373 382 IPR002464 -
Tpr3g3950 1008 CDD DEXHc_RecQ 242 441 - -
Tpr3g3950 1008 Pfam Helicase conserved C-terminal domain 458 564 IPR001650 -
Tpr3g3950 1008 SMART hrdc7 824 906 IPR002121 GO:0003676
Tpr3g3950 1008 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 243 718 IPR004589 GO:0004386|GO:0006310
Tpr3g3950 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 708 IPR027417 -
Tpr3g3950 1008 SMART ultradead3 247 450 IPR014001 -
Tpr3g3950 1008 ProSiteProfiles Rhodanese domain profile. 474 516 IPR001763 -
Tpr3g3950 1008 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 17 976 - -
Tpr3g3950 1008 MobiDBLite consensus disorder prediction 907 956 - -
Tpr3g3950 1008 PANTHER DNA HELICASE RECQ FAMILY MEMBER 17 976 - -
Tpr3g3950 1008 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 259 434 IPR014001 -
Tpr3g3950 1008 SMART helicmild6 484 565 IPR001650 -
Tpr3g3950 1008 Gene3D - 215 441 IPR027417 -
Tpr3g3950 1008 Pfam RecQ zinc-binding 576 657 IPR032284 -
Tpr3g3950 1008 SMART RQC_2 667 778 IPR018982 GO:0006260|GO:0006281|GO:0043138
Tpr3g3950 1008 Pfam HRDC domain 829 896 IPR002121 GO:0003676
Tpr3g3950 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 583 IPR027417 -
Tpr3g3950 1008 Gene3D - 665 775 IPR036388 -
Tpr3g3950 1008 MobiDBLite consensus disorder prediction 917 946 - -
Tpr3g3950 1008 Coils Coil 116 143 - -
Tpr3g3950 1008 CDD SF2_C_RecQ 442 574 - -
Tpr3g3950 1008 ProSiteProfiles HRDC domain profile. 824 906 IPR002121 GO:0003676
Tpr3g3950 1008 Gene3D HRDC domain 823 912 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3950 Tpr-Chr3 44012298 44018189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3950 474 578 Eukaryotic Initiation Factors Gene Family AT1G72730 24.762 1.05e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3950 K10901 - gmx:100800006 1603.96