Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3920 ATGAAAAAGAAGTTGAAACTTGCATTCATGGTCAATGAGTCAGCGAGAAAGATAACCTACAATAAGCGAAAAAAGAGTCTCAACAAAAGTATGGCTGAAATCACTACCCTTTGTGGAATTGATGCTTGCGGTATAATTTATAGTGAATTTCATTCAGAGCCAGAGGTTTGGCCTTCTCCATCAGAGGTCCAAAGGATTATCAACAAATTCAAAAATCATTTTGAATTTGAACAAGGTAATAAGAAGAAGCTAAGCCATGAAACCTATTTGACGCAGAGGGTTACAAAGTCGAAAGTGCAATTGGTGAAACTAGAGAAGAACAATTTGGAAATGCAGAAGTCCTTGACATTGTATCAATGTCTTCTCCAAGAAAGTTTCATCAAGACTCTGAATTCAGATGTTTTGAATGTTATAGCATGTGAAATTAATGGGAAGTTGGAGGAAATTGCTTCAAAAGCAAATGAACTTGACACAAATGCAACCCGTTAG 489 0.362 MKKKLKLAFMVNESARKITYNKRKKSLNKSMAEITTLCGIDACGIIYSEFHSEPEVWPSPSEVQRIINKFKNHFEFEQGNKKKLSHETYLTQRVTKSKVQLVKLEKNNLEMQKSLTLYQCLLQESFIKTLNSDVLNVIACEINGKLEEIASKANELDTNATR* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3920 162 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tpr3g3920 162 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Tpr3g3920 162 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 2 157 - -
Tpr3g3920 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Tpr3g3920 162 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Tpr3g3920 162 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 157 - -
Tpr3g3920 162 CDD MADS_SRF_like 1 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr3g3920 162 Gene3D - 12 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3920 Tpr-Chr3 43693461 43693949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3920 1 152 Type I MADS-box Gene Family AT1G65300 35.526 1.22e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g3920 SRF-TF 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3920 - - mtr:MTR_3g466830 227.254