Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3894 ATGGCAGTTTCTTCTCTATCAGCAACATTTGTTCCTTCTGTTTCTCAAACCAATTCTTCAACTTTATTATCTTCTAAACCTAAGTTCCAATGTTTAACCTTTCTCTCTAGTAACCCAAAATCTCTTCGATTATCAACCGCTGTTCATGCTGCTCCAGAAGTGCTGAATTCTGAGGTAACAAAAGATGTTGAGTCTGGTAACACTGATTTTCAGGTTGATGATTTGGAGACTCCAAGCACTTCATCAATTACCATCGGGGATGATGCAGACTTGCTGGCACCAAAGCAGAAAATCAGAATCAAGCTTAGATCTTACTTCGTGCCCTTGATAGAGGATTCTTGCAAGCAGATATTGGATGCAGCAAGAACTACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAAGCGAATTCACTGTGTCCTTAAATCTCCACATGTACACAAAGATGCTCGGTTCCATTTCGAGGTCAGAACTCATCAACGTGTCATTGATATTCTCTATCCTACAGCTCAAACAATAGATTCTCTTATGCAACTCGATCTTCCTGCTGGTGTCGATGTCGAGGTCAAGCTCTGA 585 0.4103 MAVSSLSATFVPSVSQTNSSTLLSSKPKFQCLTFLSSNPKSLRLSTAVHAAPEVLNSEVTKDVESGNTDFQVDDLETPSTSSITIGDDADLLAPKQKIRIKLRSYFVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEVRTHQRVIDILYPTAQTIDSLMQLDLPAGVDVEVKL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3894 194 SUPERFAMILY Ribosomal protein S10 97 194 IPR036838 -
Tpr3g3894 194 Pfam Ribosomal protein S10p/S20e 99 193 IPR027486 -
Tpr3g3894 194 PRINTS Ribosomal protein S10 family signature 97 110 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tpr3g3894 194 PRINTS Ribosomal protein S10 family signature 132 147 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tpr3g3894 194 PRINTS Ribosomal protein S10 family signature 153 167 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tpr3g3894 194 PANTHER BNAC05G40270D PROTEIN 1 194 - -
Tpr3g3894 194 TIGRFAM rpsJ_bact: ribosomal protein uS10 96 193 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tpr3g3894 194 Gene3D Ribosomal protein S10 domain 88 194 IPR036838 -
Tpr3g3894 194 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 194 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tpr3g3894 194 Hamap 30S ribosomal protein S10 [rpsJ]. 95 194 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tpr3g3894 194 ProSitePatterns Ribosomal protein S10 signature. 121 136 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr3g3894 194 SMART Ribosomal_S10_2 99 193 IPR027486 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3894 89 194 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 32.727 1.11e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3894 K02946 - gmx:100306286 275.404