Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3892 ATGTCTAGTGTTGGTATTATCTTCAAGATGACGGTAGATGATCGGTGTTTTGTGGAATGGAAAGAACAATTTGTTTCACAAGAGCGTGGACATCGTATAGTTCACTATTACTTTAAGGATTCTGCTGGAGAATCATTCCTTGCAGTTATTGGCACTGAGAGGAGTGTTAGACATATGTGCTATGTTATTGCTGAGGAGTTTCTGGAAATTTGTGGATTGGAAGTTCCACCTGGTTTCAAATGGAGATCTAGAAGAGAGGTTGTTGATTGGCTAACGTCGATGCTATCAAAGCAGCATCTGCAGGAAGATAGAAATGCATGGCCTGCTCATAATTTGGCACTAGCTCATGGGATCACAAATGGCAGTGTCAAAAAAGTTAGTGCACAAATGGTGGATGACAAGGACATTCCAACGAGTAACTCCAAATTATCCAATTCAGACATTGCTTGGTCAGGACTTGCGTGGACATGTGGCAAACAGCTCAAACATTATCCGTCTTTTTGTCGGAATGGCATCCAAATAGGAATTCAATCCTTTGTCTTCGTCATGGGCAATGGAGAGAACCATTATGTTGCTTATTTAGAGGATATGTATGAAGACAAGAGGGGGCAGAAAAAGGTTAAAGTAAGGTGGTTTCACCACAATCAGGAAGTCAAGGGTGCAATTCCCGTACGAAATCCTCACCCTCGGGAAGTTTTCATCACATCTTATTCTCAAGTCATCAGTGCAGAGTGTGTTGACGGACCTGCCACAGTCTTAACTCGTCAACATTATGAAAAATGCACGCCTTATTTTTCTCCCACTTCCAAAGACAGAATACATTTGTGCTTTCGGCAATTAAAAGGCAACAAAGTCAAGCCCTTTGACTTAAGTAAACTGCGCGGCTACTATACTCAGCCAGCTCTTTCTGCCTTGCAAGTTGATACTATCAACAATACTGAGTCTCAGAGCAACAGCCTCACAGGAGAAGATGACGATTTGGATGTTGGTGATGATACAAAGAGCGGAGATAAGAGGAGTAGAAGTAATGGTCGACAAGGGGTTAGGAAGTTGATTAGAAGTAATCAAATGATGGGATACCAAACTTTTCAGGTTGTAAATTATGCTAGGCCAGATGGGAGATTGCTTTCTTTGAAACAAGTTGAATGTAAACCTTCGTATAACATGACATGCAAAGTTGATGACAAGATAGAGGTACTCAGTCAAGATAGTGGCATCCGAGGCTGTTGGTTTAGGTGTACAGTTCTACAGGTAGCTCGGAAACAGCTGAAAGTTCAATATGATGATGTTCAAGATGAAGATGGAAGTGGAAATCTTGAGGAGTGGATCCCTGCTTTTAAGTTGGCCAAGCCTGATAAACTTGAGATGAGGCAACCTGGCCGATCGACCATCAGGCCAGCTCCACCTAATGAAGAACAAGAAGTGATTGTCGAGGTTGGAACCGCCGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGCGTTGTAACTACAATTGACAACTGTGGTGATGACAGTGTTCAAGTCTACTTTCCTGGTGAAAGCTTGCAAGTGACAGTACATAAGAAGGATTTAAGAATATCTAGAGATTGGTTAGGCGGCACTTGGATTAATATAAAGGCAAAGCCTGATATAGCTCCAACTATATTAACCACTAATAGCTTTAACACAAACCTCACCATGTCTCCATCTATGGCTAAAGACGCAGACTCAGTTAGTTTTGCAAATTCATGCCATGAAGTTCCTGCTGGTGAGAAGTCTAATGAACCTGATATTGTTGAAGAGAAACTTGTATGCAATGGTGTTGCTGAAGATAAGGTTTTTGTCCAAGATGATAATAACCCTTCAGAAAAAATTACAGATATTGAAGATAATGGTAGTAATAATGATAAGGACAACAATGAGAATGGTGATAACAAGAATGGTAATGATGAAACTAGCGACGTTGTGGAGGTGATTGTGACTTTGGGAGCTGACTGTAAAGGTGTAGAACTAATGGATGTGGCTGTGTAA 2013 0.4148 MSSVGIIFKMTVDDRCFVEWKEQFVSQERGHRIVHYYFKDSAGESFLAVIGTERSVRHMCYVIAEEFLEICGLEVPPGFKWRSRREVVDWLTSMLSKQHLQEDRNAWPAHNLALAHGITNGSVKKVSAQMVDDKDIPTSNSKLSNSDIAWSGLAWTCGKQLKHYPSFCRNGIQIGIQSFVFVMGNGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVDGPATVLTRQHYEKCTPYFSPTSKDRIHLCFRQLKGNKVKPFDLSKLRGYYTQPALSALQVDTINNTESQSNSLTGEDDDLDVGDDTKSGDKRSRSNGRQGVRKLIRSNQMMGYQTFQVVNYARPDGRLLSLKQVECKPSYNMTCKVDDKIEVLSQDSGIRGCWFRCTVLQVARKQLKVQYDDVQDEDGSGNLEEWIPAFKLAKPDKLEMRQPGRSTIRPAPPNEEQEVIVEVGTAVDAWWSDGWWEGVVTTIDNCGDDSVQVYFPGESLQVTVHKKDLRISRDWLGGTWINIKAKPDIAPTILTTNSFNTNLTMSPSMAKDADSVSFANSCHEVPAGEKSNEPDIVEEKLVCNGVAEDKVFVQDDNNPSEKITDIEDNGSNNDKDNNENGDNKNGNDETSDVVEVIVTLGADCKGVELMDVAV* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3892 670 MobiDBLite consensus disorder prediction 609 646 - -
Tpr3g3892 670 Gene3D - 140 288 IPR043151 -
Tpr3g3892 670 ProSiteProfiles BAH domain profile. 172 291 IPR001025 GO:0003682
Tpr3g3892 670 MobiDBLite consensus disorder prediction 610 645 - -
Tpr3g3892 670 SMART BAH_4 172 291 IPR001025 GO:0003682
Tpr3g3892 670 MobiDBLite consensus disorder prediction 308 350 - -
Tpr3g3892 670 MobiDBLite consensus disorder prediction 308 323 - -
Tpr3g3892 670 Pfam BAH domain 178 276 IPR001025 GO:0003682
Tpr3g3892 670 Pfam Agenet domain 394 469 IPR008395 -
Tpr3g3892 670 SMART agenet_At_2 389 454 IPR014002 -
Tpr3g3892 670 SMART agenet_At_2 475 533 IPR014002 -
Tpr3g3892 670 CDD BAH_plant_1 167 296 - -
Tpr3g3892 670 PANTHER OS07G0607300 PROTEIN 13 645 - -
Tpr3g3892 670 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 13 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3892 Tpr-Chr3 43377100 43382678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3892 401 531 PHD Transcription Factor Family AT5G58610 30.370 3.17e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3892 - - mtr:MTR_3g058500 1159.82