Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3889 ATGAAGTTGCTTCCACCACCAATAATGTTCCATTTAGTAGTATTGTTTATTAGTTATTTTTATTTTGGTAGAGCCATTGATTGTGGTGGGAAGCAAATTGTTAATACCATCACTGTTGACCAACAAAAAAAAGGAGCATTCCAAACAATTCAAGCTGCCATTAATTCTATAAAGAAGCCAAATGATCGATGGGTTATGATTAATATAAATCCTGGCACATACAAGGAACAAGTTCTTATAGATGCTAGAATGCCGTGCATTATTTTAAAAGGATCGGGTAGCAATAACACAATCATTACTTACGACAAATCATTTCACGATGGTGGCCAATCCATGAGTGCGACATTTCATTCATCTCCACATAATGTAATTTTGAGTGGCATTAAATTCCAGGTACGTAAAAGAAGTAACACGTTTGGATATAATGGACCGGCAGTAGCAACGTCTATATATGGTGATAAGACTGCAATTTTTGATTGTAGTTTCATTGGTTATCAAGATACTTTGCTTTCATCAAAGGGGCGCCAATACTTCAAAAATTGTTATATTCAAGGTGAAGATGACTTCATTTGTGGTGCTGGTCAATCTTATTTTGAGAATTGTGTGATGAATGCTACTCAAGGAGACTCTATGCCTTCAGGTTTTGTGACAGCACAACGTAGGGATAACCCAAATGATCCAAGTGGATATGTTTTTAGAGGAGGGTCAGTTGTTGGAAATGGTGAGGTGAATCTTGGAAGACCTTGGGCCCCTTACGCAAGAGTTATATTTTGGGAAACATATTTTTCTTCGGTGGTTACCCCTCAAGGATGGGTTGCTTGGGATTCAAAGAAAGGCCAAGAGAACGAGACCACATTTGCAGAAGTCAATTGTACAGGACCTGGGGCTGATACTAAGAAACGTGTCGAGTGGGAGAAGAAACCAAAAGACTTAAACTTAAATGAATATACTTTGTCATCTTTCATAAATAATGATGGATGGCTTGACAATTTACCATCTATATAA 1005 0.3741 MKLLPPPIMFHLVVLFISYFYFGRAIDCGGKQIVNTITVDQQKKGAFQTIQAAINSIKKPNDRWVMININPGTYKEQVLIDARMPCIILKGSGSNNTIITYDKSFHDGGQSMSATFHSSPHNVILSGIKFQVRKRSNTFGYNGPAVATSIYGDKTAIFDCSFIGYQDTLLSSKGRQYFKNCYIQGEDDFICGAGQSYFENCVMNATQGDSMPSGFVTAQRRDNPNDPSGYVFRGGSVVGNGEVNLGRPWAPYARVIFWETYFSSVVTPQGWVAWDSKKGQENETTFAEVNCTGPGADTKKRVEWEKKPKDLNLNEYTLSSFINNDGWLDNLPSI* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3889 334 Gene3D - 30 332 IPR012334 -
Tpr3g3889 334 Pfam Pectinesterase 37 324 IPR000070 GO:0030599|GO:0042545
Tpr3g3889 334 PANTHER PECTINESTERASE 5 334 - -
Tpr3g3889 334 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 334 - -
Tpr3g3889 334 SUPERFAMILY Pectin lyase-like 35 330 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3889 Tpr-Chr3 43359695 43362018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3889 10 281 Carbohydrate Esterase AT2G19150 41.155 8.82e-59 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3889 - - mtr:MTR_5g088290 380.563