Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3873 ATGGCGGACTCTGACAACGATTCCGGCGGTCCACACGGCGGATCGAACGCTCACGGCAGCGAGATGTCACCAAGAGAACAAGACCGATTCCTTCCGATAGCGAACGTAAGCAGGATCATGAAAAAAGCACTTCCAGCGAACGCGAAGATCTCAAAAGACGCAAAGGAAACAGTTCAGGAGTGTGTTTCAGAGTTCATCAGCTTCATCACCGGCGAAGCTTCCGACAAGTGTCAACGTGAGAAGCGTAAGACAATCAACGGTGACGATTTGCTTTGGGCGATGACGACGCTTGGATTTGAGGAATACGTGGAGCCTCTTAAGGGTTACCTTCAACGGTTTAGGGAGATGGAAGGTGAAAAAACTGTGGTGGCGCGTGACAAGGACGCGCCTCAAGGTTCTAATAGTGTTAACAATAGTTCCTTTGAGAGTGGTAGTTATGGTGGTGGAATCATGATGCATCAAGGACACGTGTACGGTTCTGGTGGGTTTCAAGTTATTGGTAAGGGTGGGCCTGGTTATCCTGGGCCTGGATCTAATCCTGGTAGGCCCAGATAG 555 0.5009 MADSDNDSGGPHGGSNAHGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGEKTVVARDKDAPQGSNSVNNSSFESGSYGGGIMMHQGHVYGSGGFQVIGKGGPGYPGPGSNPGRPR* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3873 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tpr3g3873 184 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Tpr3g3873 184 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Tpr3g3873 184 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Tpr3g3873 184 MobiDBLite consensus disorder prediction 122 141 - -
Tpr3g3873 184 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tpr3g3873 184 MobiDBLite consensus disorder prediction 1 28 - -
Tpr3g3873 184 MobiDBLite consensus disorder prediction 163 184 - -
Tpr3g3873 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Tpr3g3873 184 Gene3D Histone, subunit A 17 142 IPR009072 GO:0046982
Tpr3g3873 184 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 153 - -
Tpr3g3873 184 SUPERFAMILY Histone-fold 27 130 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3873 Tpr-Chr3 43167699 43169656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3873 1 158 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.671 6.63e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr3g3873 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3873 K08065 - gmx:100813169 278.87