Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3869 ATGGGAACCTACATAGAAAATGTTGTAGATGAGCATGAACACATTTTCCATAGCCAATATTCGCCTGTTCCGGTTCCGGACAACGTGACATTGCCAGAATTTGTGCTTCAAAATGTTGAATTTTATGGTGATAAGGTTGCATTTGTCGATGCGGAGAGTGGAAAAGGGGTTACATATAGCGAGGTAGCGAGGGATATACATAGATTTTCAAAGGCTTTAAGATCTCTTGGTTTGAGAAAAGGAAGTGTTGTGATTGTTGTACTTCCAAATGTAGTTGAATATGCTATTGTTGCTTTAGGGATTATGGATTCTGGTGGTGTATTTTCAGGTGCAAATCCAGCTTCACATACTTCAGAAATTAAGAAACAAGCTGAATCTGCTGATGCCAAATTAATTATCACAAATAGTTCAACTCATGAAAAGGTGAAAACTCTAGGACTACCTGTGATTGTCCTAGGAGATGAACTTGTTGAAGATGCTATGAATTGGAACAAACTTCTTGAAGCAGCAGACAAGGCAGGCGACGATTTAATGAAAGAACCAATTAACCAAAACGATCTTTGTGCCATGCCATTCTCCTCCGGCACAACAGGAATGTCAAAGGGTGTGATGCTTACACACAGAAATCTCGTCGCAAATCTTTGCTCTACACTCTTTAGTGTAGTGCCAGAAATGATTGGTCAAGTTACCACATTAGGGTTAATTCCATTTTTTCACATTTATGGCATCACTGGAATATGTTGTGCAACTATTAGAAACAAAGGGAAAGTTGTGGTTATGGGAAGATATGATTTGAAAATATTTTTGAAAGCTTTGATTACACACGAGGTCACATTTGCACCTATTGTTCCACCTATTATTCTTGGTTTGGTTAAAAATCCTATAGTTGATGAATTTGATCTTAGTAAGCTTAAGCTTCAAGCTATTATGACTGCTGCTGCACCACTTGCACCTGAAATACTTACTTCCTTTCAACATAAGTTCCCTGGTGTTGTTGTCCAAGAGGCATATGGACTAACTGAGCATAGTTGCATCACACTTACATTTGCACAAAAAGGATTAGGAAGTACACATAAAAATTCAGTTGGTTTTATCCTTCCAAATTTGGAAGTCAAGTTTATTGATCCTGAGACAGGTAGATCCCTCCCAAGGAACACACCAGGGGAACTTTGTGTAAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGTGGATGAGACTGCTCAGACTATTGACAAGAATGGATGGCTTCATACTGGTGATATTGGATTCATAGATGATGAAGAAAATGTTTTTATTGTTGATCGAATTAAGGAGTTGATTAAATATAAAGGCTTTCAAGTTGCTCCTGCAGAGTTAGAGGCTATTTTGCTGTCTCATTCTTCAGTTGAAGATGCAGCTGTTGTACCATTACCAGATGAAGAGGCAGGGGAAATTCCAGCTGCAAGTGTTGTTTTGAGCAAAGGTGCAAAAGAGACCGAAGAAGATATTATGAACTATGTTGCTTCTAATGCTGCTCATTACAAGAAAGTGAGAGTGGTTCACTTTGTTGAAGCTATACCAAAATCACCTTCGGGTAAAATAATGAGAAGGCTTATCAAAGAGAAGATGGTGGAAAAGATGAAGGAAAATTCTCTAACAAAACCCAACAATTATTAA 1662 0.3809 MGTYIENVVDEHEHIFHSQYSPVPVPDNVTLPEFVLQNVEFYGDKVAFVDAESGKGVTYSEVARDIHRFSKALRSLGLRKGSVVIVVLPNVVEYAIVALGIMDSGGVFSGANPASHTSEIKKQAESADAKLIITNSSTHEKVKTLGLPVIVLGDELVEDAMNWNKLLEAADKAGDDLMKEPINQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATIRNKGKVVVMGRYDLKIFLKALITHEVTFAPIVPPIILGLVKNPIVDEFDLSKLKLQAIMTAAAPLAPEILTSFQHKFPGVVVQEAYGLTEHSCITLTFAQKGLGSTHKNSVGFILPNLEVKFIDPETGRSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSKGAKETEEDIMNYVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLIKEKMVEKMKENSLTKPNNY* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3869 553 Gene3D - 440 543 IPR045851 -
Tpr3g3869 553 Pfam AMP-binding enzyme 38 444 IPR000873 -
Tpr3g3869 553 SUPERFAMILY Acetyl-CoA synthetase-like 13 541 - -
Tpr3g3869 553 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Tpr3g3869 553 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Tpr3g3869 553 Gene3D - 13 439 IPR042099 -
Tpr3g3869 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 541 - -
Tpr3g3869 553 CDD 4CL 25 532 - -
Tpr3g3869 553 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 8 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3869 Tpr-Chr3 43144064 43147384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3869 10 539 Monolignol Biosynthesis Gene Families AT1G62940 72.744 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3869 K01904 - gmx:100811418 967.222