Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3865 ATGTTGCCACAAACTGGTGCAGATGCAAATACTAGAGCTCCAACAACTTTGATGAATCCTAGGAATGATGTCATTGTGCCCCAACTAATTATGCGAAACAAAAATACTCTGCCGTTCAAAAATATAACAGACATCATGAGAAAAAGTTTGCCACCAAAGATCAAAATATCTTACGGTGCAAAGAAAATGGTTCAAATATGTTCCTCAATGTTCATAAGCAAGATAACCAAAAAAGCCAACGAGCGTTGCAAAAGTGAGTCCAGAATAACTTTGGGTGCAAATGACATATTGTGGGCGATGGATACTTTAGGTTTTAATAACTATTTTGACTGTCTCAACCTTTATCTCAAACGATATCGCTATGAGAGCTACTTTTGTCACCCTACTGGTTACTCGCGCGCCCTAATTGATGTTGGGACAAACTCTTCCATGAACCCAAATCCTATTTTTGAAATGGTTGAGGCAATAGACATGGATAAGTTTTGGGCTGGAGTGGATAATTTGGATGTTGGTTCTTCAGGCACTGGTTTGGCAAACTTTGATCCTTCTACTGAGATCAACTTTCATGGCATATGA 576 0.3889 MLPQTGADANTRAPTTLMNPRNDVIVPQLIMRNKNTLPFKNITDIMRKSLPPKIKISYGAKKMVQICSSMFISKITKKANERCKSESRITLGANDILWAMDTLGFNNYFDCLNLYLKRYRYESYFCHPTGYSRALIDVGTNSSMNPNPIFEMVEAIDMDKFWAGVDNLDVGSSGTGLANFDPSTEINFHGI* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3865 191 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Tpr3g3865 191 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Tpr3g3865 191 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Tpr3g3865 191 Gene3D Histone, subunit A 30 124 IPR009072 GO:0046982
Tpr3g3865 191 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 122 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tpr3g3865 191 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Tpr3g3865 191 SUPERFAMILY Histone-fold 35 120 IPR009072 GO:0046982
Tpr3g3865 191 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 34 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3865 Tpr-Chr3 43113283 43113858 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3865 22 120 CCAAT-HAP3 Transcription Factor Family AT1G21970 46.602 2.26e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr3g3865 CBFD_NFYB_HMF 2.2e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3865 K08065 - sspl:121773986 99.7525