Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3863 ATGGCAAAAAGGGTTTCATTGGTTAGTATAGTTGTGGAAATATGTGATCATGAGACATTTCATGTTGACAGAAGAGAGAGAGCACAACCCGGGAATGGTTTAAAGAGAGTCTTTGCTTTTGTCGGGAGTGTGCTCTCCCTTCTTCTGTCATCATCACATCACTTACTATATACTTTCCATGCTTTGCTATATGCACCACTATCTCATACCAATCAAGGAGCTCCAGCACCACAAATCAACCCAAACAACAATGTTTCTGTGCCCCAATTGGTTGAGCAAGACAAAAATGCAGCTGCAATAAAAAAGGTAACAAAAATAATGAGACAATTGTTGCCACAAAAAGCAAAAATCTCTACTAATTCAAAGGAGATGATTCAAAAATGTGTCTCAAAGTTCAACGACATTATAACTAGCAAAGCCAATGAGCGTTGTCTAAGAGGGTACAGAAAAATTTTAAAGGCAGAAGACATATTGTGGGCCATGAAGTCTCTAGGCTTTGATAACTATGATACGGCCTTCACCCATTATCTCAAAAACTATCGAGATAGTGGGCTTGGGCTTGGGCCTAGGCCTGGGCCTATGGAACCACCTGTAGAGATTCCTAAGCCCGTCTTACCTTCACAACATGTTGAGGCATATGTTGGGTTGAACACTCCCATAAGTCCAAGCCCAATTATTGAAATTTCTGATGCAGTGGAGATGGATGAAGTTTGGGCTAACTTGGGTGATTTGGATGTTGGTTCTTTAGACAATGCTGCTTCAACTAGCTTTGATGATTCAACTTTTTTCAACTTTGATGAGTTTGTTGACAATGCTGATTCAACTAGCTTTGATGTTTCAACTTTTTTCAACTTTGATGGGTTTGATGAGAGATTTGATAACTAG 885 0.3966 MAKRVSLVSIVVEICDHETFHVDRRERAQPGNGLKRVFAFVGSVLSLLLSSSHHLLYTFHALLYAPLSHTNQGAPAPQINPNNNVSVPQLVEQDKNAAAIKKVTKIMRQLLPQKAKISTNSKEMIQKCVSKFNDIITSKANERCLRGYRKILKAEDILWAMKSLGFDNYDTAFTHYLKNYRDSGLGLGPRPGPMEPPVEIPKPVLPSQHVEAYVGLNTPISPSPIIEISDAVEMDEVWANLGDLDVGSLDNAASTSFDDSTFFNFDEFVDNADSTSFDVSTFFNFDGFDERFDN* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3863 294 PRINTS CCAAT-binding transcription factor subunit A signature 125 143 - -
Tpr3g3863 294 PRINTS CCAAT-binding transcription factor subunit A signature 144 162 - -
Tpr3g3863 294 PRINTS CCAAT-binding transcription factor subunit A signature 163 181 - -
Tpr3g3863 294 SUPERFAMILY Histone-fold 102 182 IPR009072 GO:0046982
Tpr3g3863 294 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 71 189 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tpr3g3863 294 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 100 161 IPR003958 -
Tpr3g3863 294 Gene3D Histone, subunit A 90 184 IPR009072 GO:0046982
Tpr3g3863 294 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 71 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3863 Tpr-Chr3 43097388 43106914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3863 92 182 CCAAT-HAP3 Transcription Factor Family AT5G47670 53.846 5.92e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr3g3863 CBFD_NFYB_HMF 2e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3863 K08065 - han:110935072 108.612