Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3858 ATGAAGAGGAAGGGGAGGAACAACATTTTGCTGCGTGAGAAGAATGGGCAGTTTAAATTCTTGAAGCAAAGCTGTGATCCCTATTTATGTATATGTCAACATTGTTTATTCAATGAAAATAATGTTATGCGTCGTGGGCCAGATGGACGGAAAAATTTATGTAATGCATGCGGTCTCTTTTGGACGAGAACGGGGAAGCTTAAAGATCTCAGTAAGGGACGAGGAAATCTTTCTATTGATCAAAGTGATTTGGATCCTCTTATTGATGTAAACGTTACTGTTCTTGAAGGAGAATTTCCTGTCATCCAAAATGAACAAGGTATTTCTGAAGATCCTTCCAAGGCCATTGCCGCTGAAGGTTCGAATAATCATGCATTATACACCCGTGATGAGGAAAAAGGCCGGCTACTACCAAAATTTTCTGAACGGGATGTCAAAGATCCATCTTCAGCTGAGGGGTTCACAGTGATTTTTAACGAGGCAAGGGATGAGAAAAAGACAGGTAGCAATCCTGAGTCACCAGGAAAGACTGCCACTGAACCTCACAACAAACCTCCACTGGATCCTGGCAAACCTCAGAGTCCGATGAAGAGCTTCACATTTTCAGAGACTTCGGTGACGATAGAGTCATTGTTGTCATTTCTCGATAAGGACATTCCATCTACCTCAGAGGTAGACCACACTTCAGTTGTTGGCGTTTCTCAATAA 708 0.4223 MKRKGRNNILLREKNGQFKFLKQSCDPYLCICQHCLFNENNVMRRGPDGRKNLCNACGLFWTRTGKLKDLSKGRGNLSIDQSDLDPLIDVNVTVLEGEFPVIQNEQGISEDPSKAIAAEGSNNHALYTRDEEKGRLLPKFSERDVKDPSSAEGFTVIFNEARDEKKTGSNPESPGKTATEPHNKPPLDPGKPQSPMKSFTFSETSVTIESLLSFLDKDIPSTSEVDHTSVVGVSQ* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3858 235 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 31 130 - -
Tpr3g3858 235 Pfam GATA zinc finger 32 66 IPR000679 GO:0006355|GO:0043565
Tpr3g3858 235 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 72 - -
Tpr3g3858 235 ProSiteProfiles GATA-type zinc finger domain profile. 32 82 IPR000679 GO:0006355|GO:0043565
Tpr3g3858 235 PANTHER GATA TRANSCRIPTION FACTOR 28 31 130 IPR045280 GO:0006355
Tpr3g3858 235 Gene3D - 30 80 IPR013088 GO:0006355|GO:0008270
Tpr3g3858 235 SMART GATA_3 26 82 IPR000679 GO:0006355|GO:0043565
Tpr3g3858 235 CDD ZnF_GATA 31 76 IPR000679 GO:0006355|GO:0043565
Tpr3g3858 235 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 132 167 IPR008700 -
Tpr3g3858 235 MobiDBLite consensus disorder prediction 159 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3858 Tpr-Chr3 43045439 43058854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3858 32 72 Tify Gene Family AT4G24470 55.814 3.90e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr3g3858 AvrRpt-cleavage 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3858 - - mtr:MTR_3g060200 128.642