Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3825 ATGAAGATCACTGTCATGACTTCTGATGAACAAATTCTCTCCTTGGATGTCGATCCTCATGAATCTGTGGAAAACGTTAAGGCATTGCTTGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAACAGATTCTGTTCAATGGGAATGAAGTGAGCAATTCACAGAAATTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTAATGATGACTGTCTCTTCTGGTGGCGGTGGCGGTGGCGCTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCTTCAATACTGATGGATCTGCTATAAACCCTGGTGCTTTTCAGCAGCACTTTAGACGTGACTCTAATTTGATGGGGCAACTCTTTCAGAGTGACCCGGAGTTGGCACAAATTATTTTGGGGAATGATCTCAATAAACTCCAGGAAATTTTACGATTGCGTCATCGTCAAAGAGATCAATTACGACGTCAGAAAGAAGAAGAGATGGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCAATCCGCCAGAAAGGAATTGATGAAAATTGGGAAGCTGCACTCGAGCACAATCCTGAAGGTTTTGCCAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAACGGCGTACCAATGAAGGCATTTGTTGATAGTGGAGCACAATCTACCATTATATCAAAAACCTGCGCTGAGCGTTTAGGATTGCTGAGACTTTTAGATCAGCGTTACAAAGGAGTTGCTCACGGAGTTGGCCAAACCGAAATATTGGGTCGAATACATGTAGCTCCAATCAAGATTGGGAATATATTTTACCCTTGTTCATTCTTAGTGCTGGATTCTCCCAACATGGAGTTTCTCTTTGGACTGGATATGCTCCGAAAGCATCAGTGTATAATTGATTTAAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCGTTTTTGCAAGAGAAAGACATACCATCTCGGTATTTAGATGAGGAAAAATATGCCAAGGAAGCTTCAGGCTCAGGAAGCCCACGTCCAGTTGCATCAGGAAGCAATCCATCACAAGCAGGCGTGTCTTCTGGAGGAGCTTCTGGTGACAATTCTAAGGACGCTGTGTTTGAAAGCAAAGTTGCAAAGCTTGTTGAGCTAGGATTTGAAAGACAAGCAGTTATACAAGCTCTTCAATTATTCAATGGCAATGAGGAACAAGCAGCTGGATTTCTTTTTGGATGA 1242 0.4267 MKITVMTSDEQILSLDVDPHESVENVKALLEVETSVPLQQQQILFNGNEVSNSQKLSALGVKDDDLLMMTVSSGGGGGGAAASSGSTNDLSFNTDGSAINPGAFQQHFRRDSNLMGQLFQSDPELAQIILGNDLNKLQEILRLRHRQRDQLRRQKEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEGFARVVMLYVDMEVNGVPMKAFVDSGAQSTIISKTCAERLGLLRLLDQRYKGVAHGVGQTEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRYLDEEKYAKEASGSGSPRPVASGSNPSQAGVSSGGASGDNSKDAVFESKVAKLVELGFERQAVIQALQLFNGNEEQAAGFLFG* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3825 413 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Tpr3g3825 413 MobiDBLite consensus disorder prediction 347 369 - -
Tpr3g3825 413 Gene3D - 1 79 - -
Tpr3g3825 413 CDD Ubl_Ddi1_like 1 71 IPR033882 -
Tpr3g3825 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 374 413 IPR015940 -
Tpr3g3825 413 Pfam Ubiquitin family 3 72 IPR000626 GO:0005515
Tpr3g3825 413 SUPERFAMILY Acid proteases 189 305 IPR021109 -
Tpr3g3825 413 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Tpr3g3825 413 Pfam UBA/TS-N domain 377 410 IPR015940 -
Tpr3g3825 413 SMART ubq_7 1 72 IPR000626 GO:0005515
Tpr3g3825 413 Gene3D Acid Proteases 183 329 IPR021109 -
Tpr3g3825 413 CDD UBA_scDdi1_like 377 412 - -
Tpr3g3825 413 CDD RP_DDI 189 312 IPR019103 GO:0004190|GO:0006508
Tpr3g3825 413 Gene3D - 374 412 - -
Tpr3g3825 413 SMART uba_6 376 413 IPR015940 -
Tpr3g3825 413 Pfam Aspartyl protease 182 304 IPR019103 GO:0004190|GO:0006508
Tpr3g3825 413 SUPERFAMILY UBA-like 369 413 IPR009060 GO:0005515
Tpr3g3825 413 MobiDBLite consensus disorder prediction 338 370 - -
Tpr3g3825 413 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 412 - -
Tpr3g3825 413 Coils Coil 134 157 - -
Tpr3g3825 413 PANTHER AT13091P 1 412 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3825 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 25.000 6.04e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3825 K11885 - gmx:100779464 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3825 3 42711452 42717435 Tpr3g3825 3 42711452 42717435 ECH