Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3824 ATGAATGTTGATCACAACACTATCTTCTTGTACGACAACTTCAAGTATGTGCCTACTTATATATTAAACCCGGTTCTATGTCAATTGGGAGATTATGCGAGACGAATGGTTGCACTCAATACGGAAAGATGTGGAACTTGGGAGATGAAGGTGTTTCTTCATGTTACCTCATGCATGAATGAAGGTATTGCACTCGATACGAATGATAATGGTCAACAAATTGCGGATTTGTTGGATAAATTGAAAGTTCGTCCTCCTTCTTCAAATCCTATCGATCGATGTTCAATTTGTTTGGAGGAGTATTGCGAGGGATCAGATTCGGAACTCATTTATACAGAATGCTCTCATATTTTTCATGAAGAGTGTATTGGCAAGTGGCTTCATCAATGCGAAGATCGTTCATCTTCTTACTCGTGTCCAATGTGTCGACGTGAGATAATATGA 444 0.3896 MNVDHNTIFLYDNFKYVPTYILNPVLCQLGDYARRMVALNTERCGTWEMKVFLHVTSCMNEGIALDTNDNGQQIADLLDKLKVRPPSSNPIDRCSICLEEYCEGSDSELIYTECSHIFHEECIGKWLHQCEDRSSSYSCPMCRREII* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3824 147 Pfam Ring finger domain 93 143 IPR001841 -
Tpr3g3824 147 PANTHER RING ZINC FINGER PROTEIN-RELATED 13 147 - -
Tpr3g3824 147 SUPERFAMILY RING/U-box 93 146 - -
Tpr3g3824 147 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 13 147 - -
Tpr3g3824 147 ProSiteProfiles Zinc finger RING-type profile. 94 143 IPR001841 -
Tpr3g3824 147 SMART ring_2 94 142 IPR001841 -
Tpr3g3824 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3824 Tpr-Chr3 42710221 42710664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3824 3 147 C3H Transcription Factor Family AT1G20823 27.273 4.60e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3824 - - mtr:MTR_5g006240 125.176