Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3817 ATGGCTAGAACAAGTCCTACCCAACTCCCCATCCGTTTCTTCAAGATTATCCTCCAAACTAATCTTCAAAGACTTAAAATACCAAATAAGTTTACAAGGAGACATGGAGTGAGTCTATCAAATCCAGTGTTGATCAATCCTCCTGATGGCACCAAATGGAAAGTTTATTGGAAAAAAGTCAATGGTGAGATTTGGTTTGAAAAAGGTTGGAAAGATTTTACTCAAAATTACTCTCTACAACAAGGTTATTTGGTGTTATTCAAATATAGAAAAGGAACTTCCAACTTCAATGTACTAATACTTGGCCAGAATGCAATGGAAATAGACTATGGTTCTTCATCTGACACTGATGATGATGAAAATGACAATGTTGGTGATAGTGATGATGAATCGGTTAAGATTATAGATGGAAAGAACAATAGTATTGATCATAGTGATGATGAATCAGTTAAGATTTTGGATGAATGGCTTAAACGGAAGAAGAACAAACAAATGTCACCAATAGGTCGATCTCCTCGACCACATAAGAAAGTTAGGGGTGAGACTGAGAACATTACTAAAAGAGCTCAGGAAGTAGCTGCAAAATTCATCTCAAGCAATCCTTTTTTCACAATTCTCATAAAGCCTTATCATCTGGTAAAAGGTCAGCTGTATGTACCGAGTTTAAAAGGTGTTACTGAGCACAAAGAGAAGTATGTGATGCTGCAGATTGGAAAAAGATCATGGAATGTGAAACTGCTTCGTTGTAATGACGAAGAAAAAGGACGTCGCCTTTCAGCCGGTTGGAATTTGTTTGCAAGTGAAAGTGGACTGAAACCAGGAGATGTTTGTGTGTTTGAACTGATAAACAAGAATGATTTAGTTTTTAAAGTTCATGTTTTCTAA 885 0.3627 MARTSPTQLPIRFFKIILQTNLQRLKIPNKFTRRHGVSLSNPVLINPPDGTKWKVYWKKVNGEIWFEKGWKDFTQNYSLQQGYLVLFKYRKGTSNFNVLILGQNAMEIDYGSSSDTDDDENDNVGDSDDESVKIIDGKNNSIDHSDDESVKILDEWLKRKKNKQMSPIGRSPRPHKKVRGETENITKRAQEVAAKFISSNPFFTILIKPYHLVKGQLYVPSLKGVTEHKEKYVMLQIGKRSWNVKLLRCNDEEKGRRLSAGWNLFASESGLKPGDVCVFELINKNDLVFKVHVF* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3817 294 PANTHER B3 DOMAIN-CONTAINING 10 294 - -
Tpr3g3817 294 CDD B3_DNA 202 294 IPR003340 GO:0003677
Tpr3g3817 294 Gene3D - 8 105 IPR015300 -
Tpr3g3817 294 MobiDBLite consensus disorder prediction 112 126 - -
Tpr3g3817 294 MobiDBLite consensus disorder prediction 112 131 - -
Tpr3g3817 294 Gene3D - 181 294 IPR015300 -
Tpr3g3817 294 Pfam B3 DNA binding domain 20 100 IPR003340 GO:0003677
Tpr3g3817 294 Pfam B3 DNA binding domain 202 294 IPR003340 GO:0003677
Tpr3g3817 294 SUPERFAMILY DNA-binding pseudobarrel domain 12 111 IPR015300 -
Tpr3g3817 294 SUPERFAMILY DNA-binding pseudobarrel domain 198 294 IPR015300 -
Tpr3g3817 294 ProSiteProfiles B3 DNA-binding domain profile. 202 294 IPR003340 GO:0003677
Tpr3g3817 294 MobiDBLite consensus disorder prediction 163 182 - -
Tpr3g3817 294 SMART B3_2 13 104 IPR003340 GO:0003677
Tpr3g3817 294 SMART B3_2 202 292 IPR003340 GO:0003677
Tpr3g3817 294 CDD B3_DNA 12 101 IPR003340 GO:0003677
Tpr3g3817 294 ProSiteProfiles B3 DNA-binding domain profile. 10 104 IPR003340 GO:0003677
Tpr3g3817 294 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3817 Tpr-Chr3 42632130 42633751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3817 9 294 B3 DNA Binding Superfamily AT3G18990 29.446 5.63e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr3g3817 B3 5.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3817 - - mtr:MTR_3g061330 314.309