Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3816 ATGGCTAGGAGAAATGCTACTCTCTCCATCCGTTTCTTCAAGATCATCCTCCAAACTACTCTTCAAAGACTTAAAATACCAAATAAGTTTACAAAGAGTTATGGAGTTAGTCTATCAAATCCAGTGTTGATCAAGCCTCCTGATGGCACCAACTGGAAAGTTTATTGGAAAAAAGTCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAAAGATTTTACTCAAAGTTACTCTCTACAACAAGGTTATTTGGTGTTATTTAAATATAGAAAAGGAACTTCCAACTTCAATGTACTCATACTTGGCCAGAATGCAGTAGAAATAGATTATGATCCTTCATGTGACACTGATGATGATGAAAATGACAATGTTGGTGATAGTGATGATGAATCAGTTCAGATTTTGGATGAAAAGAACAATAGTATTGATCACAGTGATGATGAATCAGTTGAGATTTTGGATGAAAGGCTTAAACGGAAGAAGAATCGACAAAGATCACCATTAGGTTCTACTCGACCACATAAGAAAGTTAGAAGTGAGACTGAGAACATTACTAAAAGAAGTTCATGCTTTAATTGGCCAAAGGGAGATAAGAGCTCAGGAAGTTGCTGCAAAATTCAACTCAAGCAATCCTTTTTTCACAATTCTCATAAAGCCTTGTCATCTGGTAAAGGGACTGCTGGTAAGTGGATACCAGGTTTAAAAGGTGTTACTGAGAACAAAGAGAAGTATGTGATGCTGCAGATTGGAAAAAGATCATGGAATGTGAAACTGCTTCGTTGTAATGACGGAAAAAAAGGGCGTCGCCTTTCAGCCGGTTGGCGCTTGTTTGCAAGTGAAAGTGGTCTGAAACTAGGAGATGTTTGTGTGTTTGAACTGATAAACAAGAAAGATTTAGTTTTTAAAGTTCATGTTTTCTAA 918 0.3682 MARRNATLSIRFFKIILQTTLQRLKIPNKFTKSYGVSLSNPVLIKPPDGTNWKVYWKKVNGEIWFEKGWKDFTQSYSLQQGYLVLFKYRKGTSNFNVLILGQNAVEIDYDPSCDTDDDENDNVGDSDDESVQILDEKNNSIDHSDDESVEILDERLKRKKNRQRSPLGSTRPHKKVRSETENITKRSSCFNWPKGDKSSGSCCKIQLKQSFFHNSHKALSSGKGTAGKWIPGLKGVTENKEKYVMLQIGKRSWNVKLLRCNDGKKGRRLSAGWRLFASESGLKLGDVCVFELINKKDLVFKVHVF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3816 305 SMART B3_2 12 103 IPR003340 GO:0003677
Tpr3g3816 305 SMART B3_2 202 303 IPR003340 GO:0003677
Tpr3g3816 305 ProSiteProfiles B3 DNA-binding domain profile. 251 305 IPR003340 GO:0003677
Tpr3g3816 305 CDD B3_DNA 244 305 IPR003340 GO:0003677
Tpr3g3816 305 Gene3D - 173 305 IPR015300 -
Tpr3g3816 305 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Tpr3g3816 305 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 7 305 IPR039218 -
Tpr3g3816 305 MobiDBLite consensus disorder prediction 156 180 - -
Tpr3g3816 305 CDD B3_DNA 11 100 IPR003340 GO:0003677
Tpr3g3816 305 SUPERFAMILY DNA-binding pseudobarrel domain 11 103 IPR015300 -
Tpr3g3816 305 SUPERFAMILY DNA-binding pseudobarrel domain 241 305 IPR015300 -
Tpr3g3816 305 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 7 305 - -
Tpr3g3816 305 Pfam B3 DNA binding domain 19 99 IPR003340 GO:0003677
Tpr3g3816 305 Pfam B3 DNA binding domain 235 305 IPR003340 GO:0003677
Tpr3g3816 305 Gene3D - 6 104 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3816 Tpr-Chr3 42629863 42631483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3816 12 305 B3 DNA Binding Superfamily AT3G18990 26.531 3.11e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr3g3816 B3 2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3816 - - mtr:MTR_3g061330 284.263