Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3809 ATGGGACGTATTCCATGTTGTGAGAAGGACAATGTGAAGAGAGGTCAGTGGACACCTGAGGAAGATAACAAGCTCTCTACTTACATTGCTCAACATGGCACTCGCAACTGGCGCCTCATTCCCAAGAATGCTGGCCTTCAGAGATGTGGAAAGAGCTGCAGGTTAAGGTGGACTAATTACCTTCGTCCTGACCTTAAGCATGGCAATTTCTCGGATGCAGAAGAACAAACCATCGTGAAGCTTCATTCAGTTTTCGGTAACAGGTGGTCACTCATAGCAGCCCAGCTGCCAGGACGCACCGACAATGATGTCAAAAACCACTGGAACACCAAGCTGAAAAAGAAACTGTCAGGCATGGGTATAGACCCTGTTACCCACAAACCATTCTCCCATCTAATGGCGGAAATTGCTACAACATTGGCACCCCCACAGGCAGCTCACCTAGCTGAAGCAGCCCTCGGTTGTTTCAAAGATGAGGTGCTCCACCTTCTTACCAGGAAGCCAATTAACTACCAGGGCCAACATTCTAATGCAGCAATGGGGAATAACATCACCGATTACTTTAACTGTAAGCCAGAAGAAAGGGAAGATACTGTTGAGAAGATTAAGTTTGACCTATCAAAGGCCATACAACAAGAACATGAAATGGTACCCACAAATAAACCTTGGGACTCCACTGCTACATCTGCAAGTTTTGCAATGCCATACAATGTTTTCCCTACGATGTCTGGGTTTCAGTTCAGTCCATCATATTTTGGCAATAAAGGGGATGCATCACCATGGAACCAAAGTTTATGTACCGGAAGCACATGCACAGCCATGGATCAGCAAAGCCAGTTTCATGAAAAACTTCAAGAGGAAAATGGGGATGATTCTGAGGCTACAAAAGAAATTAGAAATCTATCCAATATATTCAACTCAGACTGTGTTGTGTGGGATTTACCAGCCGAAGATTTAATTAATCCCATGGTATAA 975 0.4451 MGRIPCCEKDNVKRGQWTPEEDNKLSTYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGNFSDAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTRKPINYQGQHSNAAMGNNITDYFNCKPEEREDTVEKIKFDLSKAIQQEHEMVPTNKPWDSTATSASFAMPYNVFPTMSGFQFSPSYFGNKGDASPWNQSLCTGSTCTAMDQQSQFHEKLQEENGDDSEATKEIRNLSNIFNSDCVVWDLPAEDLINPMV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3809 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tpr3g3809 324 CDD SANT 69 112 IPR001005 -
Tpr3g3809 324 SMART sant 66 114 IPR001005 -
Tpr3g3809 324 SMART sant 13 63 IPR001005 -
Tpr3g3809 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tpr3g3809 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr3g3809 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr3g3809 324 CDD SANT 17 61 IPR001005 -
Tpr3g3809 324 PANTHER TRANSCRIPTION FACTOR MYB80 1 324 - -
Tpr3g3809 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr3g3809 324 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Tpr3g3809 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr3g3809 324 Gene3D - 14 66 - -
Tpr3g3809 324 PANTHER F14D16.11-RELATED 1 324 - -
Tpr3g3809 324 Gene3D - 68 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3809 Tpr-Chr3 42540722 42542093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3809 1 324 MYB Transcription Factor Family AT5G56110 56.193 1.18e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g3809 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3809 K09422 - gmx:100800764 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3809 3 42540722 42542093 Tpr3g3809 3 42540722 42542093 ECH