LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g3800	ATGCAACCCAAGTCTGAAACCGCAAATCAACTGAGATCAGATCCTCATTCATTTCAGCCCAGTGGTGTTTATTCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTGGCGCAATCGAAATCGATGTCTGGTGCCAATTCCTCATCTCTTGATTGCCCCAATGGTGATTCAGAATCTAATGAGGAAGGTCAGTCTATGTCCAATAGTGGGATGAATGAGGAAGATGATGATGCCGCTAAGGATTCACAGCCTGCTGCTCCTAATCAGTCAGGAAATTATGGGCAAGACCAACAAGGAATGCAGAACGCTGCATCATCTGCACTTACTATTCGTGAAGAATGCCTCACACACACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCATATTACGGGGGCATGATGGCAGCTTATGGTCACCAGCCATTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTGAATGCCAAACAATACCAGGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTATGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAAAAAACTGATGGGGAGGGCTCAAACTCAGGAAAGGATAATGGCTCTGGTCCAGTCCTGTCATCACAGTCAATTAGTTCATCTGGTTCAGAACCTTTGCCTTCGGACTCTGCCGAAACCTGGAACTCTCCCAACATGCGACAAGATGCAAGAGCATCAAATGAAAATGGTGGTGGCTCCTATCATAGTAACAACAATGGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGATGATGGTGGGGACTGTTCAGGGCAGCTGCGTGGAAGCATGTCCTCAAACGAGGCATCTCAGAGGCGACTTGCAATTCAGTAG	1011	0.4649	MQPKSETANQLRSDPHSFQPSGVYSEPWWRGVGYNPVAQSKSMSGANSSSLDCPNGDSESNEEGQSMSNSGMNEEDDDAAKDSQPAAPNQSGNYGQDQQGMQNAASSALTIREECLTHTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQPLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNSGKDNGSGPVLSSQSISSSGSEPLPSDSAETWNSPNMRQDARASNENGGGSYHSNNNGMQSSRYQGERVDDGGDCSGQLRGSMSSNEASQRRLAIQ*	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g3800	336	MobiDBLite	consensus disorder prediction	206	336	-	-
	Tpr3g3800	336	MobiDBLite	consensus disorder prediction	1	20	-	-
	Tpr3g3800	336	ProSitePatterns	NF-YA/HAP2 subunit signature.	178	198	IPR018362	GO:0003677\|GO:0016602
	Tpr3g3800	336	SMART	cbf3	172	233	IPR001289	GO:0003700\|GO:0006355
	Tpr3g3800	336	MobiDBLite	consensus disorder prediction	40	73	-	-
	Tpr3g3800	336	MobiDBLite	consensus disorder prediction	40	106	-	-
	Tpr3g3800	336	MobiDBLite	consensus disorder prediction	240	304	-	-
	Tpr3g3800	336	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	175	230	IPR001289	GO:0003700\|GO:0006355
	Tpr3g3800	336	PRINTS	CCAAT-binding transcription factor subunit B signature	176	198	IPR001289	GO:0003700\|GO:0006355
	Tpr3g3800	336	PRINTS	CCAAT-binding transcription factor subunit B signature	207	230	IPR001289	GO:0003700\|GO:0006355
	Tpr3g3800	336	MobiDBLite	consensus disorder prediction	1	28	-	-
	Tpr3g3800	336	ProSiteProfiles	NF-YA/HAP2 family profile.	173	233	IPR001289	GO:0003700\|GO:0006355
	Tpr3g3800	336	Gene3D	-	173	235	-	-
	Tpr3g3800	336	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	31	326	IPR001289	GO:0003700\|GO:0006355
	Tpr3g3800	336	MobiDBLite	consensus disorder prediction	318	336	-	-
	Tpr3g3800	336	MobiDBLite	consensus disorder prediction	208	227	-	-
	Tpr3g3800	336	MobiDBLite	consensus disorder prediction	84	106	-	-
	Tpr3g3800	336	PANTHER	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9	31	326	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g3800	Tpr-Chr3	42471385	42475061	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g3800	16	274	CCAAT-HAP2 Transcription Factor Family	AT5G12840	55.133	2.05e-87	262

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Tpr3g3800		CBFB_NFYA	1.4e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g3800	K08064		-	gmx:100808378	517.694