Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3798 ATGAAGACGAAGATCTCCCAGAACTGTGATAATGCATTGGCGTATGTTAAGGCAGTAGAATTTACCTTTCATCAATATGATAGGAAAAAGTATGATGAGTTTTTAAAAATCATAATAGATTTGAATTTGAGGAAGGGTGGAAAAAGAAAAATTGCTACAAGAGTGAAGAAGTTGTTTGAAGGGAATCCGGATTTAATTTTGGGATTCAACACCTTATTGCCAAAGGAATATCAAATCACACTTCCTCGTAGGACTGGGAGAAATGTGAAGAAGGTAGAAGAAAATGGTGTACTTCCTTGGGATGTGCTTAATATCATTGCTAAAAGACTAGATTTTGACGACCTCTTTAACTTTGCTGGCGTGTGCAAGAATTGGATGGCTTTTCACAAAATTTATTGGAGAAATTTCTTGACCTCCCAAGAACCATTACTTCTAGAAAATTCATATGATGCTCGTTATAATTTTTCGTTTACGCTTAGTAGCATATCTGACCAAAAAGTTTATTGCTTGAAGATGAAGAAGTGCTTCCTCTTTAACTCTCGCTATGTTGCGTCTTCTAGCGGATATTTTATCATGGAGGGGCCCAATAATTCATTTCTCTTAATCAACCCATTTACAAGAATAAATAAGATAATCAATAAATTTGAAGTTAAGCCTGATTATACCACCAATCATGCCTTGCTTGCTTTTGGCAAATGTTCTGAGGAATTTGTCTTGGTGGTTTTATGCTTTAGAAGTTTGAATGTCTATCAATCTCGAAATTGTGGTTGGGTTACTTATTCGACAACGAAAAATCAAGGGACGGTTGTCGACTTTGTGGTTTTTCATAATAAAATATATGTTCTCACTAACATGGGCAACATAGGGGTACTCAACTTGAATTTTGCAAATATTAAATTTCTAAAACTGAAGAGTACTCCTAATGCAAGAATTTTCGGACGCCTTCGTTGGTTGGTTTGTTGTGAGGAGCAACTTTTAGTGGTTGATTTTTCGAATAGCAAAACATTACCGGATGTGTACAAGATAGACTTCTCAACTATGAATTATGTCAAACTTGAAACTTTGGGTGACATTGCATTATTCTATGTTGAGTGCAAAAGCTGTTATGCATTGAGCAACCCGAATAGATGGGGATATCAGAGCAACTCTATCTATGTCACCGGTTTTGGAAACAACCAAGAATGTATTATGTATTCTTGGGATGATAAAAATTTGAAAAAATGCATTACACTTCCGGCTCAGGCTTCTGGCAGAAAACGTCCTTATATACATGATTGGTTATTTAGACATATAAAATATGAGGTAGATTATTCTTTAGTTGAGTAA 1326 0.3522 MKTKISQNCDNALAYVKAVEFTFHQYDRKKYDEFLKIIIDLNLRKGGKRKIATRVKKLFEGNPDLILGFNTLLPKEYQITLPRRTGRNVKKVEENGVLPWDVLNIIAKRLDFDDLFNFAGVCKNWMAFHKIYWRNFLTSQEPLLLENSYDARYNFSFTLSSISDQKVYCLKMKKCFLFNSRYVASSSGYFIMEGPNNSFLLINPFTRINKIINKFEVKPDYTTNHALLAFGKCSEEFVLVVLCFRSLNVYQSRNCGWVTYSTTKNQGTVVDFVVFHNKIYVLTNMGNIGVLNLNFANIKFLKLKSTPNARIFGRLRWLVCCEEQLLVVDFSNSKTLPDVYKIDFSTMNYVKLETLGDIALFYVECKSCYALSNPNRWGYQSNSIYVTGFGNNQECIMYSWDDKNLKKCITLPAQASGRKRPYIHDWLFRHIKYEVDYSLVE* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3798 441 Gene3D Paired amphipathic helix 11 74 IPR036600 GO:0006355
Tpr3g3798 441 PANTHER OS06G0113600 PROTEIN 84 438 - -
Tpr3g3798 441 PANTHER OS06G0113600 PROTEIN 84 438 - -
Tpr3g3798 441 Pfam F-box domain 98 125 IPR001810 GO:0005515
Tpr3g3798 441 SUPERFAMILY YWTD domain 256 412 - -
Tpr3g3798 441 ProSiteProfiles PAH domain profile. 1 76 IPR003822 GO:0006355
Tpr3g3798 441 SUPERFAMILY F-box domain 97 142 IPR036047 GO:0005515
Tpr3g3798 441 Pfam Paired amphipathic helix repeat 30 72 IPR003822 GO:0006355
Tpr3g3798 441 SUPERFAMILY PAH2 domain 7 77 IPR036600 GO:0006355
Tpr3g3798 441 ProSiteProfiles F-box domain profile. 92 136 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3798 Tpr-Chr3 42443703 42448007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3798 11 81 WRKY Transcription Factor Family AT4G12020 46.479 1.59e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr3g3798 PAH 6.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3798 - - cam:101488742 444.891