Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3789 ATGAAGGATTGCAAGGATGAAGAAATTGTTCCAAGAGATGTCAAAGCAAGAGCCATAGAATTGGTTGAGGGCCATAAACATTTAACCTTGGGAATCAACAAGATGCCAAAGAAATATCAAATCACCATTCATCGAAAACGACTACAAGAAGCAGCAGCGTTTATCAGTCAAGTAAAAGTAGTGTTTAAAGATAACAATGAAAAATATTTTGAGTTTATACAAGTCATGATGGATTTCAAGAATAAAAAAACTGATACATTAGGTGTCTTTGAAATGGTGATTAAGGTGTTTAAAGGACATACCGATTTACTTTTGGAATTCAACAGTTTCATGCCAGCAGGATCTCTATTATCAAAACAAGCTTCCTTAGTTCCATTGTATCATGATCATAAACAAGTTCATCAATTAGTGATAAAAGATGCATTTCTCAATAAAGTCAAACTTGTGTTTCAAGATAACATGGAAATATATTTCAAGTTTTTACAAGTCATCAATGATCATAAGGCTCAAGGAATTGACATAAGAGGTGTAGTGGCAATAGTGAAAGAGCTGTTTAAAGGGCATAAAAATTTAATTTTGGGATTCAATGCCTTCTTGCCAAAGGAATATAAAATCAAACTTATTACATTTAAGCTTCATGGGAAAAGAGTGAAGAAGGTAGCAGAGAACGGTGAACTTCCTTGGGATGTCCTTGATATAATTTCGAAAACTCTAGATATCGATGACCACTTCGAATTTGCTTGTGTGTGCAAGAATTGGAGGGCATTTCATAAAATGTATTGGAGATCGGCATTCGAAGAACCACTAGTTGTTCATAAGTCTTCCTATGTTAATAAATCTTATTCCTTTACCAGCATATCTAACCAAAAAGATTATCAATCAAATATGATCAATTATTACTGGCACTTTGCTTATTCTGGATCTTCTAGTGGATATTTGATCATGACAGGGAACAATAATTCATTTATGCTAATCAATCCATTTACTAGAAGAAAGAAGGTAATCAATACCTCAACCTTTAAAGTAAAATTTTCTTATTTTGCCTACCATGTCTTACTTGCTTTTCGAAAAGGTTCCGATGAGGAATTTGTTTTACTGGCTTTATGTAAAAGTTCCAACAGTTTGCATGTCTATCAATCTCGAAATGTTGATTGGGTTACTTGTTCTGAAATGGGATATCCATGGACGACGATTGTTGACTTCGTTGTTTTGCATAACACTATATATGTTGTCACCGACAAAGGCAACATAGGGGTACTCAATTTAAATTCTGTAAATATAGAATTTATAGAAATGCAGAGTAGTATTCTCAGTTTAACTTCTTCGTCACGCCTAAGGTTGGTTAGTTGTGATGGACAACTTTTTGTGGTTCATACTAAACCCAAAGTAGTGTTTAATGTGTACAAGGTTGACTTCTCAACTATGAATTATGTCGAATTGGAAAATTTAGGTGACATTGCATTATTTTATGCTCCTGGCGGAAACTACTACGCATTAAGTAACCCAAACATATGGGGTTATGAAAGGAACTCAGTGTATTCCATCGATCATTCAACTCGAAAATGCACGGTGTATTTAGGGGATGATCACAAACTGCCAGAATACACTTATTATGATAATAGACTTCAAGCTCCTCCTCCTCCTAATGAAAGACCCTCCTTGTTGGACTGGTATTTTAGAGATCTACACTACGAGGTAGACTATGATCTCTAG 1713 0.3462 MKDCKDEEIVPRDVKARAIELVEGHKHLTLGINKMPKKYQITIHRKRLQEAAAFISQVKVVFKDNNEKYFEFIQVMMDFKNKKTDTLGVFEMVIKVFKGHTDLLLEFNSFMPAGSLLSKQASLVPLYHDHKQVHQLVIKDAFLNKVKLVFQDNMEIYFKFLQVINDHKAQGIDIRGVVAIVKELFKGHKNLILGFNAFLPKEYKIKLITFKLHGKRVKKVAENGELPWDVLDIISKTLDIDDHFEFACVCKNWRAFHKMYWRSAFEEPLVVHKSSYVNKSYSFTSISNQKDYQSNMINYYWHFAYSGSSSGYLIMTGNNNSFMLINPFTRRKKVINTSTFKVKFSYFAYHVLLAFRKGSDEEFVLLALCKSSNSLHVYQSRNVDWVTCSEMGYPWTTIVDFVVLHNTIYVVTDKGNIGVLNLNSVNIEFIEMQSSILSLTSSSRLRLVSCDGQLFVVHTKPKVVFNVYKVDFSTMNYVELENLGDIALFYAPGGNYYALSNPNIWGYERNSVYSIDHSTRKCTVYLGDDHKLPEYTYYDNRLQAPPPPNERPSLLDWYFRDLHYEVDYDL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3789 570 Pfam Paired amphipathic helix repeat 67 110 IPR003822 GO:0006355
Tpr3g3789 570 Pfam Paired amphipathic helix repeat 155 199 IPR003822 GO:0006355
Tpr3g3789 570 SUPERFAMILY F-box domain 225 270 IPR036047 GO:0005515
Tpr3g3789 570 ProSiteProfiles PAH domain profile. 124 202 IPR003822 GO:0006355
Tpr3g3789 570 PANTHER OS06G0113600 PROTEIN 220 567 - -
Tpr3g3789 570 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 309 524 IPR011044 -
Tpr3g3789 570 PANTHER OS06G0113600 PROTEIN 220 567 - -
Tpr3g3789 570 ProSiteProfiles PAH domain profile. 44 114 IPR003822 GO:0006355
Tpr3g3789 570 SUPERFAMILY PAH2 domain 141 201 IPR036600 GO:0006355
Tpr3g3789 570 Gene3D Paired amphipathic helix 50 112 IPR036600 GO:0006355
Tpr3g3789 570 Gene3D Paired amphipathic helix 141 200 IPR036600 GO:0006355
Tpr3g3789 570 SUPERFAMILY PAH2 domain 47 112 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3789 Tpr-Chr3 42356709 42368763 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3789 142 208 WRKY Transcription Factor Family AT4G12020 52.239 7.15e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr3g3789 PAH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3789 - K11644 cam:101488742 631.328