Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3781 ATGACATCCTATTCACGGAGATCAAGGTATTCTGCCTCTCCCTCCCCCTCTCCATCGCCCTCTCCATACAGGCGATACGGTAGGTCTTTGTCCAGGTCTCTATCAAGGTCCATATCCAGAAGCCGTTCAAGGAGCACTTCACGAGATGCAGAAAATCCGGGAAACAATCTGTATGTGACAGGACTGTCTCCCAGGATTACCAAGAGAGAACTGGAAAAACATTTTGCTGCTGAGGGAAAAGTTGTAGATGTCCATCTGGTTGTTGATCCATGGACAAGGGAGTCACGTGGTTTTGGATTTGTGACAATGGCGACTTTAGAAGAAGCTGATCGATGTGTGAAGTATCTGAATCGCTCTGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACCCCAACACCTGGGAAATATCTAGGTCTCAGGACTATTCGAGGACGACGTCACTCTCCAAGCTACTCTCCTAGTCCTCGTCGTTCTCCTATCTATTCTCGTTCTCCTATCTATTCTCCCTGTCGTTCACCTTATTCTTCAGATCGCAGTCGAAGTCGCTCTTACTCACCCGAATACAGCCGACGAAGGACCTACTCTCCTGACTACAGGCGAAGGAGGGCATACTCGCCATACTATAGTCGACGCAGGTCATACTATCGTTATGACCGGCACAGGTCTTATTCCCGGTCTCGCTCTCCTTACAGCAGGTCTCCTGTCAGCATGCGTGACAGATCATACTCTCCCTATGGCTCCAGATATGACTCACCTGATGATAGCTACTATAGAAGGTACCGTTACAGATCGGTTTCTCGAAGCGTCTCACCCAGGCCAAGGAGGAGCTACTCGCAGAGTGCCTCTCCTGTTCATAGTGTCTCCCCCAGGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAAGCTCTAGAAGGAGTGGTTATTACAAATCTAAGCATTCTCGATCAACTAGCTCAAGTTTGAGTGTTAGTTCCAGATCGTTTTCAAGGTCCAACACTCCCGGATCTACCTCTCCTTCATATTGA 1050 0.4886 MTSYSRRSRYSASPSPSPSPSPYRRYGRSLSRSLSRSISRSRSRSTSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVVDVHLVVDPWTRESRGFGFVTMATLEEADRCVKYLNRSVLEGRVIMVEKARRRRGRTPTPGKYLGLRTIRGRRHSPSYSPSPRRSPIYSRSPIYSPCRSPYSSDRSRSRSYSPEYSRRRTYSPDYRRRRAYSPYYSRRRSYYRYDRHRSYSRSRSPYSRSPVSMRDRSYSPYGSRYDSPDDSYYRRYRYRSVSRSVSPRPRRSYSQSASPVHSVSPRPRKRSGRSHSRSSRRSGYYKSKHSRSTSSSLSVSSRSFSRSNTPGSTSPSY* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3781 349 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 14 311 - -
Tpr3g3781 349 MobiDBLite consensus disorder prediction 272 349 - -
Tpr3g3781 349 MobiDBLite consensus disorder prediction 176 190 - -
Tpr3g3781 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Tpr3g3781 349 Gene3D - 5 139 IPR012677 -
Tpr3g3781 349 PANTHER TRANSFORMER-2-RELATED 14 311 - -
Tpr3g3781 349 MobiDBLite consensus disorder prediction 298 319 - -
Tpr3g3781 349 SMART rrm1_1 56 129 IPR000504 GO:0003723
Tpr3g3781 349 MobiDBLite consensus disorder prediction 1 56 - -
Tpr3g3781 349 MobiDBLite consensus disorder prediction 227 258 - -
Tpr3g3781 349 MobiDBLite consensus disorder prediction 277 294 - -
Tpr3g3781 349 SUPERFAMILY RNA-binding domain, RBD 46 157 IPR035979 GO:0003676
Tpr3g3781 349 MobiDBLite consensus disorder prediction 155 169 - -
Tpr3g3781 349 MobiDBLite consensus disorder prediction 132 213 - -
Tpr3g3781 349 MobiDBLite consensus disorder prediction 320 349 - -
Tpr3g3781 349 MobiDBLite consensus disorder prediction 22 41 - -
Tpr3g3781 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3781 Tpr-Chr3 42210259 42213658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3781 56 169 Eukaryotic Initiation Factors Gene Family AT2G36660 32.174 2.07e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3781 - - mtr:MTR_3g462330 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3781 3 42210259 42213658 Tpr3g3781 3 42210259 42213658 ECH