Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr3g3774 | ATGTCTGAATCTTCACAAACCACTAAAACCGGACGGTCTACTCGATCAAAGACAAAAATCGATCCCTCAAAGATTATCAAGGACGCGGTCCCTGTTACAATTGTTCGTGCTTCCAAATCCAAAACTCAATCAAGTGTTGCTGAGAAGAAGGTAAAGGGAAAATCAGTTGAAAAGATGAAAGCTCCAAAAGTAAGTGACAATACTTCCCCTTCTATTGATAAATCTGGTAAAGGAAGTTCTAAGAAGAAGAAAAGGGATTATAAGTCTAGAATTCCTCTTTCTATGTCTGATCTGGTTTTTGAATCTAATGTTAAAACATCCGAGCAAACAACTGAAGAAGATTCTCAGAACCCTAAATCTGTAGAACGTTCAACTTCCATCTTCTTCAATCACAAAATTCACCCCTGTGCACTCATCATGTCTGACTCGGCCAAATCTTCACCAACAAAGACAGATGCTGTACCATCACCACAAATGGCGATAAATGCTATTCCACTCAACACCATACCTGCCACAAGTCCAACGATGAGGAGAAAATCTGTTGCAAAGAAGGCTAAATCATCGCGAACGAATACAAATCCTTCCTCTCCCGCTGAAATTAAAACACGTAAAGGCAAGAAAGGGAAAGGTGAATCGAGTAAGCCTTTTACAATGTCTGAACTTCACATTGATCCACTACCATCAAGTGATGTTGCAACGCCTGTCTCCAATCCTACAGTTGAAAATGTTACTGCATCTGGTAAGATTTCTGTTAATTTAGGTCTTAATACACCAAAATCTGCTGAAACCCTAGGTTTAAAGGACCCTGCTATGTCTGAAAAATTGGGGAAAACTGTTCCTAACCCTCCTACTGTTGTTGCAAAGCAAAACACAATGAAGAAGATAAAATCTCGTTCAGAAAATCTTGATGAAAAGAACAAGAACAAGACCAAAGATCAATCCTCAATGAAGAAGAGAAAGAGAAATTCTCTTTCAGAAAATATTGATGAAAAGAACAAGAACAAGAAGAATGTTAAAGTTCAATCCTCAAAAACATTCACATGCGGTATATGTTTTGATTCTGTTAGAGTCTCTAAAAGATTCACAAACACTTCATGCAATCATCCCTTTTGTAGAACTTGCATATCAAAATATGTTAAAGTTCAAAGAAAAGACAAAGTGGTGAAACTGAATTGTCCCAATCCAACTTGTTCTGTTCAACTCACACCAGAACATTTACAATCTATTTTATCTAAAAAAGTTATGATTGATTGGGAATCTGCGATCCACGAGTCTTCGATTTCTTTGGAGCAAAAGATTTACTGTCCTTACAAGAATTGTTCAATTTTGTTGGTGAATGACGGGGCCGAGGTTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGGTTATTCTGTGCACAATGTAAAGTTCCGTGGCACGCAGATATGAGTTGTCGGGAATTTCTTGATTCGAAAAATGGTCGACATGAGAAACGTTTGGAAAAGAAATTTTTAGATTTGGCTACAAAGGAAAAGTGGCAGAAATGTCCCAAATGTTCTATGCATGTTCAGAGAAATGGTGGATGTGATTCCATGCATTGCAGGTGTGGATGTAACTTCTGCTACAAGTGTGGTGGGGATTTGGCTCGTGTACATAGGTGCAATGCTACACCTAGATTATAA | 1662 | 0.3803 | MSESSQTTKTGRSTRSKTKIDPSKIIKDAVPVTIVRASKSKTQSSVAEKKVKGKSVEKMKAPKVSDNTSPSIDKSGKGSSKKKKRDYKSRIPLSMSDLVFESNVKTSEQTTEEDSQNPKSVERSTSIFFNHKIHPCALIMSDSAKSSPTKTDAVPSPQMAINAIPLNTIPATSPTMRRKSVAKKAKSSRTNTNPSSPAEIKTRKGKKGKGESSKPFTMSELHIDPLPSSDVATPVSNPTVENVTASGKISVNLGLNTPKSAETLGLKDPAMSEKLGKTVPNPPTVVAKQNTMKKIKSRSENLDEKNKNKTKDQSSMKKRKRNSLSENIDEKNKNKKNVKVQSSKTFTCGICFDSVRVSKRFTNTSCNHPFCRTCISKYVKVQRKDKVVKLNCPNPTCSVQLTPEHLQSILSKKVMIDWESAIHESSISLEQKIYCPYKNCSILLVNDGAEVVTSCECPSCHRLFCAQCKVPWHADMSCREFLDSKNGRHEKRLEKKFLDLATKEKWQKCPKCSMHVQRNGGCDSMHCRCGCNFCYKCGGDLARVHRCNATPRL* | 554 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr3g3774 | 553 | MobiDBLite | consensus disorder prediction | 293 | 336 | - | - | |
| Tpr3g3774 | 553 | MobiDBLite | consensus disorder prediction | 264 | 336 | - | - | |
| Tpr3g3774 | 553 | MobiDBLite | consensus disorder prediction | 168 | 233 | - | - | |
| Tpr3g3774 | 553 | MobiDBLite | consensus disorder prediction | 43 | 61 | - | - | |
| Tpr3g3774 | 553 | MobiDBLite | consensus disorder prediction | 99 | 122 | - | - | |
| Tpr3g3774 | 553 | SUPERFAMILY | RING/U-box | 431 | 483 | - | - | |
| Tpr3g3774 | 553 | SUPERFAMILY | RING/U-box | 342 | 425 | - | - | |
| Tpr3g3774 | 553 | Pfam | IBR domain, a half RING-finger domain | 428 | 478 | IPR002867 | - | |
| Tpr3g3774 | 553 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 306 | 547 | - | - | |
| Tpr3g3774 | 553 | SUPERFAMILY | RING/U-box | 497 | 547 | - | - | |
| Tpr3g3774 | 553 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 306 | 547 | IPR031127 | GO:0004842|GO:0016567 | |
| Tpr3g3774 | 553 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 341 | 429 | IPR013083 | - | |
| Tpr3g3774 | 553 | ProSiteProfiles | Zinc finger RING-type profile. | 348 | 393 | IPR001841 | - | |
| Tpr3g3774 | 553 | MobiDBLite | consensus disorder prediction | 1 | 122 | - | - | |
| Tpr3g3774 | 553 | Coils | Coil | 321 | 341 | - | - | |
| Tpr3g3774 | 553 | ProSiteProfiles | TRIAD supradomain profile. | 344 | 553 | IPR044066 | - | |
| Tpr3g3774 | 553 | ProSitePatterns | Zinc finger RING-type signature. | 366 | 375 | IPR017907 | - | |
| Tpr3g3774 | 553 | SMART | ibrneu5 | 416 | 478 | IPR002867 | - | |
| Tpr3g3774 | 553 | SMART | ibrneu5 | 491 | 547 | IPR002867 | - | |
| Tpr3g3774 | 553 | Gene3D | - | 476 | 552 | - | - | |
| Tpr3g3774 | 553 | Coils | Coil | 292 | 312 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr3g3774 | Tpr-Chr3 | 42132308 | 42144216 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr3g3774 | 347 | 539 | C3H Transcription Factor Family | AT2G19610 | 28.571 | 4.97e-20 | 90.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr3g3774 | K11975 | - | mtr:MTR_3g462570 | 305.834 |