Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3768 ATGAAGTGGGAAATGGAAATTCTTTCACCTAATTCTCATCCTCATGCACCATTTGTTCAAAATTCTAACAATACCAACAATTGGTTTTTGGAAGATAATAGCAGCATAATTAACAGGAACACAAAATGGACTCCTGCAGAGAACAAATTGTTTGAAAATGCTCTTGCAGTTTACGATAAGGATAAGCCGGATCGGTGGCATAAAGTAGCTGAAATGATACCTGGAAAGAGTGTTATTGATGTGATGAATCAGTATAAGGAATTAGAAGCTGATGTTTGTAACATAGAAGCTGGTTTAATTCCAATTCCTGGTTATAGTACTAGTACTACTACTACTACTACTTCACCTTTTACCTTAGATTGGGTTAATTCTTCTGGTTATGATGGTTTTAGAGGAATCAATTCAAAGAGAGGCTCTTCTGGTAGATCTCCTGATCAAGAAAGGAAAAAAGGTGTACCATGGACTGAAGAAGAACACAAGTTATTTCTATTGGGATTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATTTCAAGGAATTTTGTGATAACAAGAACACCAACACAAGTTGCTAGCCATGCTCAAAAGTATTTCATAAGACAACTTTCAGGAGGCAAAGACAAAAGAAGAGCTAGCATTCATGACATAACAACAGTTAATCTCACAGAAACTTCTAGAACTTCTCCAAATTCAGAAGACACAAAAAGATTATCCACTTCACCAAACCATAACAATTCGATGAATATCAACAAGTATTCAGCTGTTAACGCCGCATCTGAGATGCATTTTCAGCCAGCTATGAATGCATTCAATCCTGCTGCACATGAACAAATTTTCATGTCTCCTTATGGAGTTAATAACTCTTATGGATTGCATAGAAATCATCCTCTTCATGAGTCTTCTTACTTTGGATCTCAGACACAAAACATGGTTTTCCAAATGCAATCTTCTCAACAACACTATTCACATGCATGA 975 0.36 MKWEMEILSPNSHPHAPFVQNSNNTNNWFLEDNSSIINRNTKWTPAENKLFENALAVYDKDKPDRWHKVAEMIPGKSVIDVMNQYKELEADVCNIEAGLIPIPGYSTSTTTTTTSPFTLDWVNSSGYDGFRGINSKRGSSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSRTSPNSEDTKRLSTSPNHNNSMNINKYSAVNAASEMHFQPAMNAFNPAAHEQIFMSPYGVNNSYGLHRNHPLHESSYFGSQTQNMVFQMQSSQQHYSHA* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3768 324 MobiDBLite consensus disorder prediction 133 152 - -
Tpr3g3768 324 CDD SANT 153 198 IPR001005 -
Tpr3g3768 324 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Tpr3g3768 324 MobiDBLite consensus disorder prediction 221 244 - -
Tpr3g3768 324 ProSiteProfiles SANT domain profile. 154 202 IPR017884 -
Tpr3g3768 324 Gene3D - 35 102 - -
Tpr3g3768 324 Pfam Myb-like DNA-binding domain 42 87 IPR001005 -
Tpr3g3768 324 Pfam Myb-like DNA-binding domain 153 198 IPR001005 -
Tpr3g3768 324 Gene3D - 152 202 - -
Tpr3g3768 324 ProSiteProfiles Myb-like domain profile. 146 198 IPR001005 -
Tpr3g3768 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 202 IPR017930 -
Tpr3g3768 324 SMART sant 150 200 IPR001005 -
Tpr3g3768 324 SMART sant 39 91 IPR001005 -
Tpr3g3768 324 SUPERFAMILY Homeodomain-like 148 201 IPR009057 -
Tpr3g3768 324 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 298 IPR043363 -
Tpr3g3768 324 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 298 - -
Tpr3g3768 324 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 149 201 IPR006447 GO:0003677
Tpr3g3768 324 CDD SANT 42 88 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3768 Tpr-Chr3 42058349 42061221 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g3768 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3768 - - cam:101514273 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3768 3 42058349 42061221 Tpr3g3768 3 42058349 42061221 ECH
Tpr3g3768 3 42058349 42061221 Tpr4g2436 4 26095077 26097481 ECH
Tpr4g2652 4 29433273 29436316 Tpr3g3768 3 42058349 42061221 ECH
Tpr6g2320 6 25378150 25381159 Tpr3g3768 3 42058349 42061221 ECH