Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3758 ATGAAGCTCTTCTCACTCTTTGGAAAAAAAGAATCGTTGAATACTCGTGCAGCAAACAAAACATGCGGCATATGCTTTGAAGAAAAAACAGATTCTGATATATTTGAACTAAGATCCAAGGTCTTCAATAGAAGAAAATGCAAGCACATCTTTTGCATTGACTGTGTACGCAAGTATATAGCTGTTAAAATAAATGATAATGCTTATAAGGTGATGTGTCCAAGTCCAAGTTGTTGTGTGAAATTTAAGCCAAAACATTTGAAACACATTTTGCCTAAAGAAATTCTTGCTAAATGGAAGTATTTAATTTCTGAGTTTTCTATGCCCTCCAAGCCAAAGACTTACTGCCCTTTTCCGAATTGTTCGGTTTTGTTGGGGGAAGAATTTGTCAACCAGTCTAAGTGTCCTTCGTGTCACAGAGACTTTTGTGCACAATGCAAAGTTGCATGGCATGCAGGAATGAGTTGTCAGAAATTCCAACAATTGAAAAAGAATGACAAAAATGATTTGGATAACAAATTTATGGAGTTGGTCAACAGAAATAAGTGGCAAAGATGTCCAAATTGCTCTATGTATGTCAAGAGAAGTGAGGGGTGCAGTTTACTGAAATGCAGGTGTGGATGCAAATTCTGCTACAAATGTGGGAAGAAGCGATCATTTGCACCACATACATGCAATAGTAGTTAG 687 0.3683 MKLFSLFGKKESLNTRAANKTCGICFEEKTDSDIFELRSKVFNRRKCKHIFCIDCVRKYIAVKINDNAYKVMCPSPSCCVKFKPKHLKHILPKEILAKWKYLISEFSMPSKPKTYCPFPNCSVLLGEEFVNQSKCPSCHRDFCAQCKVAWHAGMSCQKFQQLKKNDKNDLDNKFMELVNRNKWQRCPNCSMYVKRSEGCSLLKCRCGCKFCYKCGKKRSFAPHTCNSS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3758 228 ProSiteProfiles Zinc finger RING-type profile. 22 74 IPR001841 -
Tpr3g3758 228 SUPERFAMILY RING/U-box 20 109 - -
Tpr3g3758 228 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 226 - -
Tpr3g3758 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 112 IPR013083 -
Tpr3g3758 228 ProSiteProfiles TRIAD supradomain profile. 18 228 IPR044066 -
Tpr3g3758 228 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Tpr3g3758 228 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 226 IPR031127 GO:0004842|GO:0016567
Tpr3g3758 228 Pfam IBR domain, a half RING-finger domain 109 156 IPR002867 -
Tpr3g3758 228 SUPERFAMILY RING/U-box 173 219 - -
Tpr3g3758 228 SUPERFAMILY RING/U-box 105 161 - -
Tpr3g3758 228 Gene3D - 154 228 - -
Tpr3g3758 228 SMART ibrneu5 168 225 IPR002867 -
Tpr3g3758 228 SMART ibrneu5 97 156 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3758 Tpr-Chr3 41944410 41947059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3758 20 215 C3H Transcription Factor Family AT2G19610 25.837 1.51e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3758 K11975 - mtr:MTR_0777s0010 228.024