Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr3g3757 | ATGAAGCTCTCACTCTTTGGAAAAAAAGATTTGTCAAAACAACTTCCCTCGCATAATCAAGAACCAAACAAAACATGCGGAATATGTTTTGATCTGAAAATAGATTCCGAAATCTTCAAACTAACGTCCAAAATCTTCAAAAGGCGAAAATGCAACCATCTCTTTTGCATCGACTGCATACGCAAGTATCTAGAAATTAAATTAAATGATAATGTGTATAAGGTGATGTGTCCAAGCCCAAATTGTTGTGTTACATTTAAGCCAAAACATTTGCAACACATTTTGCCAAAACATTGTATTTCTCGATGGGAGTATTTAATTTTCGAGTCTTCTATTTCCATGGAGCAAAAGAATTACTGCCCTTATCAGAATTGTTCTGTTTTGTTGGAGAAAGGTAATGACATTAGAGGAAAATTTGTCACGAATTCCAAGTGTCCTTCGTGTCACAGAAACTTTTGCGCACAATGCAAAGTTCCATGGCACGAAGGAATGGATTGTCAGAAATTCCAACAATTGAAATGGGGTGACAAATATGATTTGGATATCAAATTTTTGGAGTTGGCCAAAAGAAAGAAGTGGAAAAGATGTCCTAATTGCTCTATGTTCGTCAATAGAAGTCGCGGATGTAATGACATGCTTTGCAGGTGTGGATGTCATTTCTGCTACAGGTGTGGGAAGAAATGGGGTTTTCATACAAGACATAAATGCAATAGTAGTTAG | 720 | 0.3639 | MKLSLFGKKDLSKQLPSHNQEPNKTCGICFDLKIDSEIFKLTSKIFKRRKCNHLFCIDCIRKYLEIKLNDNVYKVMCPSPNCCVTFKPKHLQHILPKHCISRWEYLIFESSISMEQKNYCPYQNCSVLLEKGNDIRGKFVTNSKCPSCHRNFCAQCKVPWHEGMDCQKFQQLKWGDKYDLDIKFLELAKRKKWKRCPNCSMFVNRSRGCNDMLCRCGCHFCYRCGKKWGFHTRHKCNSS* | 240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr3g3757 | 239 | ProSiteProfiles | TRIAD supradomain profile. | 22 | 239 | IPR044066 | - | |
| Tpr3g3757 | 239 | SUPERFAMILY | RING/U-box | 177 | 237 | - | - | |
| Tpr3g3757 | 239 | Pfam | IBR domain, a half RING-finger domain | 103 | 166 | IPR002867 | - | |
| Tpr3g3757 | 239 | Pfam | IBR domain, a half RING-finger domain | 187 | 236 | IPR002867 | - | |
| Tpr3g3757 | 239 | ProSiteProfiles | Zinc finger RING-type profile. | 26 | 78 | IPR001841 | - | |
| Tpr3g3757 | 239 | Pfam | Zinc finger, C3HC4 type (RING finger) | 26 | 78 | IPR018957 | GO:0046872 | |
| Tpr3g3757 | 239 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 18 | 231 | IPR031127 | GO:0004842|GO:0016567 | |
| Tpr3g3757 | 239 | SMART | ibrneu5 | 176 | 236 | IPR002867 | - | |
| Tpr3g3757 | 239 | SMART | ibrneu5 | 101 | 166 | IPR002867 | - | |
| Tpr3g3757 | 239 | Gene3D | - | 164 | 239 | - | - | |
| Tpr3g3757 | 239 | ProSitePatterns | Zinc finger RING-type signature. | 51 | 60 | IPR017907 | - | |
| Tpr3g3757 | 239 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 18 | 231 | - | - | |
| Tpr3g3757 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 115 | IPR013083 | - | |
| Tpr3g3757 | 239 | SUPERFAMILY | RING/U-box | 106 | 171 | - | - | |
| Tpr3g3757 | 239 | SUPERFAMILY | RING/U-box | 21 | 110 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr3g3757 | Tpr-Chr3 | 41941454 | 41942444 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr3g3757 | 46 | 225 | C3H Transcription Factor Family | AT2G19610 | 30.481 | 2.58e-18 | 81.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr3g3757 | K11975 | - | mtr:MTR_0777s0010 | 275.404 |