Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3753 ATGAAAGAAGTACGTGTAGGTGGTGGTGATCATATAAAGATCACCAACCACTCTTCAATTGGTCCTCATTTGAGTGCAATTGATAGATTCTTATGGGGTCAACAAAACCATATCCCTCAAAAGAAATTTCAACAAAGTGTTGATGATCAAAATATGTGTAGCTTTGATTATTCTAATGCTTTACCCTATAGTTTTATGTGGCCTAATAATAACATGATTATGACTCAAGAAGCTAGCTTTGTTGATCATCTATTGGCAAATGAAGAGGTGATGAATTGGTCAGACCAAATTCCTTCATTGTGTGTGGAGAAAGAAGATGTGGTCAATGGTTTAGGAAAGGGTGCAAAAGTTGGAAGAAAACCTAAGAAAGTGCCTTCTTTTTCTTTGATCAAAGGACAATGGACCGAAGAAGAAGACAAGAAATTGGTGAAATTGGTGAAGCAACATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGTCGAGAGAGATGGCATAATCATCTTAGGCCTGATATTAAAAAAGATAGTTGGAGCGAAGAAGAAGAAAGAATACTAGTAGAAAGCCATGGCACGATTGGAAACCGTTGGGCTGAGATAGCAAAGAAAATTCCCGGAAGAACTGAGAATGCAATCAAGAATCATTGGAATGCAACAAAAAGGAGACAAAATTCGAGGAGAAAGAACAAAAGGCCTCAAACCACAAATGGTAAACCACAATCTTCTATTCTCCAAGACTATATCAAAACTTTGACTCAAAAACCGTCCACTACTACTACCACTACTACTACTGCTGCGTCTAGCTCCACGTCAGGAATATCTGAGGACCCTTCTTCAAACCAATCCAACCTTGTTTTTTCCGGCCTTTCTCATGAAAATTCGTCGTCACCACTTATAGATGAATCTTATGATGATGAACTTCTCTTCATGCAACAACTTTTCAAAGCAAATAATAATGCTGAGCCAGTTAACCCCTTCTACAAGAAACCCTCTTCAAATTCTTATTCATTGGATTATTCTCCTCAAACTAATAACAATAATCAGATTCTCTCTGATGTTAATGATCATGGTTTTGTTCATTCCAATTACAATTCCAATTCCAATTACCCTATGATGAATAACCTTAATTCTGATCACTACTTTTCACCAATGCTGAATGGAATTCATCACAACCAAAGTAATGTGAATTATTCAGATGGAAAGAGAGAGATGGATTTGTTGGAGTTGGTTTCTTCTGCTCAGTTTTTTTAA 1275 0.3702 MKEVRVGGGDHIKITNHSSIGPHLSAIDRFLWGQQNHIPQKKFQQSVDDQNMCSFDYSNALPYSFMWPNNNMIMTQEASFVDHLLANEEVMNWSDQIPSLCVEKEDVVNGLGKGAKVGRKPKKVPSFSLIKGQWTEEEDKKLVKLVKQHGVRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVESHGTIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKRPQTTNGKPQSSILQDYIKTLTQKPSTTTTTTTTAASSSTSGISEDPSSNQSNLVFSGLSHENSSSPLIDESYDDELLFMQQLFKANNNAEPVNPFYKKPSSNSYSLDYSPQTNNNNQILSDVNDHGFVHSNYNSNSNYPMMNNLNSDHYFSPMLNGIHHNQSNVNYSDGKREMDLLELVSSAQFF* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3753 424 Pfam Myb-like DNA-binding domain 134 191 - -
Tpr3g3753 424 CDD SANT 134 177 IPR001005 -
Tpr3g3753 424 SMART sant 130 179 IPR001005 -
Tpr3g3753 424 SMART sant 182 230 IPR001005 -
Tpr3g3753 424 Gene3D - 130 182 - -
Tpr3g3753 424 MobiDBLite consensus disorder prediction 214 289 - -
Tpr3g3753 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 232 IPR017930 -
Tpr3g3753 424 ProSiteProfiles Myb-like domain profile. 131 177 IPR001005 -
Tpr3g3753 424 MobiDBLite consensus disorder prediction 227 241 - -
Tpr3g3753 424 SUPERFAMILY Homeodomain-like 128 224 IPR009057 -
Tpr3g3753 424 ProSiteProfiles Myb-like domain profile. 178 228 IPR001005 -
Tpr3g3753 424 PANTHER MYB DOMAIN PROTEIN 64-RELATED 125 348 - -
Tpr3g3753 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 181 IPR017930 -
Tpr3g3753 424 PANTHER MYB PROTEIN-RELATED 125 348 - -
Tpr3g3753 424 MobiDBLite consensus disorder prediction 242 289 - -
Tpr3g3753 424 Gene3D - 184 253 - -
Tpr3g3753 424 CDD SANT 185 228 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3753 Tpr-Chr3 41888872 41891195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3753 21 421 MYB Transcription Factor Family AT5G11050 38.813 9.66e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g3753 Myb_DNA-bind_6 4.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3753 K09422 - gmx:100786295 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3753 3 41888872 41891195 Tpr3g3753 3 41888872 41891195 ECH