Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3746 ATGGGAAAAAGTTCATTTCAAGAATCTCTGAAAGCTCTAGAAGCTGATATTCAGTATGCTAATACACTGGCATTAAGCCATCCAAGGGATAAAGATGGAGGATGCTATCAGATGAGGCTATCATATAGTCCAGTTGCTCCAATGTTTATCTCACTTGTTCAATGGACTGATTACCGCCTTGCTGGTGCTCTTGGTTTGCTCAGAATTTTAATTTATGTGACATATGGAAATGGGAAGACTACTATTTCAATATATGAAAGGAAAGCAAGCATAAGACAATTTTATACTGTATTATTTCCTGCTCTATTGCAACTTCAAATGGGCATCACAGATTTGGATGAAAGGAAACAGAAAGAAGAATATGCTATTAAATACCAAAAGAAGAATGATTTCAAAGGTTGGAAAGAATCTGAAATTGACATTGAAAGAGATCAGGAATGTGGAGTTTGTTTGGAGGTGAAAACAAAAGTTGTTCTGCCTAATTGTTGCCACCAAATGTGTTTCAACTGTTACAGAGACTGGTGTCTTAGGTCTCAATCTTGCCCCTTTTGCCGGGATAGCTTGGAGAGAGTAAACTCTGGTGACCTTTGGATTTACACAGACACAAGTGATATTGTTGATGTTGGAACAATTTTCAAAGAGAATTGTAAGATTCTGTTTATTTACATAGAAAATTTGCCTCTAATTATTCCATACCCAAGACATGTCTCTTATGATCCATTTTTTAGATAA 732 0.3593 MGKSSFQESLKALEADIQYANTLALSHPRDKDGGCYQMRLSYSPVAPMFISLVQWTDYRLAGALGLLRILIYVTYGNGKTTISIYERKASIRQFYTVLFPALLQLQMGITDLDERKQKEEYAIKYQKKNDFKGWKESEIDIERDQECGVCLEVKTKVVLPNCCHQMCFNCYRDWCLRSQSCPFCRDSLERVNSGDLWIYTDTSDIVDVGTIFKENCKILFIYIENLPLIIPYPRHVSYDPFFR* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3746 243 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Tpr3g3746 243 PANTHER RING FINGER PROTEIN 41, 151 1 243 - -
Tpr3g3746 243 SUPERFAMILY RING/U-box 128 189 - -
Tpr3g3746 243 SMART ring_2 147 184 IPR001841 -
Tpr3g3746 243 Pfam Zinc finger, C3HC4 type (RING finger) 144 190 - -
Tpr3g3746 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 243 - -
Tpr3g3746 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 194 IPR013083 -
Tpr3g3746 243 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3746 Tpr-Chr3 41785478 41788400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3746 112 188 C3H Transcription Factor Family AT1G04360 30.864 2.05e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3746 - - gmx:100808567 413.69