Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3734 ATGTGTAACGGTTCAAATAGAAACCCTTCTCAAACAGGTTTGATTAGGGAACATGAATATAGAAGACAAGAAGAACTTCATCATATGATTTCTGCATTGCTTGAGTTTTCAGCCAAAGATGATGTAATAGCTTTCAAAGATGCGGTTGAAAAAGACGGTTGTGATGTCGATGAGGTAGGGTTATGGTATGGAAGGAGGGTTGGCTCAAAGGAAATGAGTTATGAAGAAAGGACTCCTCTTATGATTGCTGCCTTATTTGGAAGCAAGGGTGTGTTGTCTTATATTCTAGAAACTGGTCGTGTTGATGTTAACCGAGCGTGTGGTTCGGATGGTGCTACTGCTCTTCATTGTGCTGTTTTTGGTTGTTCTGCTGATTCTGTTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAGTTCTGTTGATGCAAACGGTAATAGGTGTATTGATTTGATTGTTTTGGTTTCTAATAGTATCTTCGGTTCAAGGAAGAGGATACTAGCCATACTAGAAGGTGAAGATGATGTTGATTATGACGGCGATGATTGCCTTAAGGAAGCAGGTTTCCAAATGGGTAAACTGCAACAAGATTCAGGTTCACCTCAAATCGAGAAGAAAGATTATCCGATCGATCCATCGCTACCGGACATAAAGAATGCGATATATAGTACAGATGAATTTAGGATGTATACATTCAAAGTCAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGCCCCTTTGCTCATCCTGGGGAAAACGCAAAGCGCCGTGATCCGAGGAAATATCATTACACCTGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCACTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGAGCTGGCTTCATCCTGCTCAATATAGAACGAGGCTATGCAAAGATGAAACTGAATGCACAAGAAGGGTTTGCTTCTTTGCTCACAAACCCGAGGAGCTTCGTCCGGTGTACGCTTCTACCGGTTCTGCTTTGCCTTCACCTACATCATATTCAAATTCACCTAGTCCTTCTTCAATGGATTCTTTCACACTGAACTCTCCATCTGCGGCGATGCCCCCTTTGAATCCGTCTGCAGTGTCTTCTCCTTTAGGCGGAACCATGTGGCCGACTCAGTCTTATGCTGCAATCCCTACACTTCAAATGCCGAAAACCAGATTGAATAATGCACATAATGCTAGAGATAATATTGAATTGCTCGAACTTGAAAACTGCCTTATGCGGAAGCTAATGATCGAAGAGATGACAGGTCTTTCATCTCCTTCAAATAGGTTTTCAGGAGTGAATCTTACTAACCAAGAAGACATTTTCTTGTCTCCGAGACAATCTCAAACACCAATGCAGGTGCATCAGAATCTAAACCAGCAAATGTGGGGCTATCCTTCTGACATTACCAATTCAAATGTGATTGGATCACCACAATTCAAGGCTGATCCATCTACGAATTCAAGATATGATGCGTTTTCGAAGCGGAGCAATAGCTTTATTGAGCGCAGCAGCAGGTCGAGCTTTAATTCTGAGTTTCCTTCTGCTACATCAGTTGCTGCATCGCCTTCAAACTTCTCCGGTTGGGGATCCCCAGATGGAAAATTAGACTGGTCCGTTCGTGGCGATGAACTCAACAAAATGAGGAAATCATATTCTTTAGTCTTTCAAAACACAAATAGCTTTTCAACAATGGCTGCACCAAATGTTGAAGTTGAAGTTGAAGATGATCAGCAATGCCATAATCAAGACGCGGTTCTCTCTTTGCCGGAGCAATTGTACACGGACCTTGAGCAGATGGTGATGTGA 1839 0.4252 MCNGSNRNPSQTGLIREHEYRRQEELHHMISALLEFSAKDDVIAFKDAVEKDGCDVDEVGLWYGRRVGSKEMSYEERTPLMIAALFGSKGVLSYILETGRVDVNRACGSDGATALHCAVFGCSADSVEVIKLLLDASADVSSVDANGNRCIDLIVLVSNSIFGSRKRILAILEGEDDVDYDGDDCLKEAGFQMGKLQQDSGSPQIEKKDYPIDPSLPDIKNAIYSTDEFRMYTFKVKPCSRAYSHDWTECPFAHPGENAKRRDPRKYHYTCVPCPEFRKGSCTKGDACEYAHGIFESWLHPAQYRTRLCKDETECTRRVCFFAHKPEELRPVYASTGSALPSPTSYSNSPSPSSMDSFTLNSPSAAMPPLNPSAVSSPLGGTMWPTQSYAAIPTLQMPKTRLNNAHNARDNIELLELENCLMRKLMIEEMTGLSSPSNRFSGVNLTNQEDIFLSPRQSQTPMQVHQNLNQQMWGYPSDITNSNVIGSPQFKADPSTNSRYDAFSKRSNSFIERSSRSSFNSEFPSATSVAASPSNFSGWGSPDGKLDWSVRGDELNKMRKSYSLVFQNTNSFSTMAAPNVEVEVEDDQQCHNQDAVLSLPEQLYTDLEQMVM* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3734 612 SUPERFAMILY Ankyrin repeat 45 157 IPR036770 -
Tpr3g3734 612 Pfam Ankyrin repeats (3 copies) 68 142 IPR002110 GO:0005515
Tpr3g3734 612 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Tpr3g3734 612 Coils Coil 604 612 - -
Tpr3g3734 612 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Tpr3g3734 612 Gene3D - 22 114 IPR036770 -
Tpr3g3734 612 SMART ANK_2a 110 142 IPR002110 GO:0005515
Tpr3g3734 612 SMART ANK_2a 75 105 IPR002110 GO:0005515
Tpr3g3734 612 PANTHER UNKEMPT FAMILY MEMBER 18 589 IPR045234 -
Tpr3g3734 612 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Tpr3g3734 612 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 18 589 - -
Tpr3g3734 612 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Tpr3g3734 612 Gene3D - 269 331 - -
Tpr3g3734 612 MobiDBLite consensus disorder prediction 334 359 - -
Tpr3g3734 612 MobiDBLite consensus disorder prediction 337 359 - -
Tpr3g3734 612 Gene3D - 115 173 IPR036770 -
Tpr3g3734 612 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Tpr3g3734 612 SMART c3hfinal6 303 326 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3734 Tpr-Chr3 41669000 41671652 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3734 25 589 C2H2 Transcription Factor Family AT5G12850 41.628 8.30e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr3g3734 Ank_2 5.6e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3734 - - mtr:MTR_1g075890 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3734 3 41669000 41671652 Tpr3g3734 3 41669000 41671652 ECH
Tpr4g2709 4 30098346 30101542 Tpr3g3734 3 41669000 41671652 ECH