Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3724 ATGGAGGCTTTCGAGAATTCGAGCTCCATAAACCCTAAACCTACTTTCCCGCAACAAAAGCTTCAAATCAGTGAAAGGGTTGAGGTGAGGAGTTTTGAGGAGGGTTTTTTGGGATCATGGCATCCAGGAACAGTTATTCATTGTGAGAAGCTGAATCGTTATGTTAGATATGAGAATATTTTGAATGATGATGGGTTGAGTCATTTTGTGGAAGAAGTGACTGTTTCAAGTGTTTTGGATGGTAATTTCGGAACTCCGAGTATACGCGGGGTGATTAGGCCACTGCCACCTTTGGTTGAGTTTGAGAAATGTGATCTTAAGTATGGTCTGTGTGTTGATGTAAATTATCAGGAAGCTTGGTGGGAAGGTGTTGTATATGATCACTGTGACGGAATGGAGGAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATGAAGGTCGGAATTCATGAAATGCGGATTACTCAGGATTGGGATGAAGTCACGGAGAAGTGGGAGCAACGCGGGAAATGGTTGTTTCTTGAATTGATTGAGGAGTGTGAGCGGGAATCTTATGTTCCAGTTTCGGTAAAGCAAATTTGGTATGATGTGCGACAGAAAGTTGAATTTTCCGCAATTGAGGAATGGACTTTGAATGTGAAGAAGGATTTGTGGAGAGACATGATAATGGAGGTAGTTGGTGACTACATGGCTATTACATTAACTGAAGTTTTGTCAGCCTTGAAGCTTCCAGAGCTGAACTTAGTTGAACTAATATCTAATGTTGATTCAAACGCGAATTTATCTGAAAAGGAAAATTTTGAGCCGATAGAATCTGTTCTTCCTGTTGAAAAGGACTTGTCTAGGTTTCAAAATGAAGTTTCCTGCAACGGCGCTGGTGAAGAAGTTTCGGTTGCTATCGGTTTTGAGAAAAAGGAACACACTTCATTAACTTATTTTAACTCCAATAGGTGGGAACGTGTAATATTTTCAGAAACTGAATACTGTCCTGATGTTGTTAAGCAATATATACTTGTTTCTAAGGACAAAACGGCTATGCAATCTTTGAAGGAAAAAGTATTGAAACATCTTGCATATCTTGGATGGGAAATTGACGTTGACCGTAATAAACATTACAGGTACAAGCCACCCCCTGGAGACCATTGCAAGAAGAAACCTTACTACTACTCACTTATTGAACTTTGTAAAGTTATGCAAATGGAATCGATGCATCCTACCAGTGACTGTCTTATTCCCGATGTGCCTCTTAATCCATTGGAAGATATTCAGAACCGAGATGCATCTCCTCTAGTTGCAGACAAACAAGCGCCTCCTTCTGTTGCAGCGGCAGATGAACAAGCTTATTGTCCTCAAGCCATTGTGGAATACCACAAACAATTCGGGGCGAAACAGAAAAGTAAACTTATTTCAAAAGTAAAAAGACATCTTTTAGCAGAAGGATGGACTTTAATTGAGCCACCTCCAGATAATAGAAGAAGAGGTGTTGTGTACATTTCTCCGCAACAGCGGAGATTCCAGTCACTGATCACAGCATGCAAATTCTACGTTGAAGAAATTATTCCAAAATTAACTATTTCTGGCATGCAACCTTCAAATAGATCACTTGTTCAAAAACCTTCAAATAGATCATCACATTTGCTTCCTCAGGAGCCTGAGGTACACACTATAGACACTGCTGCTGCGAATAAATCACGTGCAAATCGAAAGCGAAAACGCTTTAGGAATTCGGATGACAGCCTGCCGAAGTGCCAAAGCAATGAATCAACTCTAAGGGTGCTGAGATCACATAAAAGGGTGAGAGAGGCATCTTCCTCTTGTTTGTCAAACCAGAAACCTCTAAATGTTCTGTCTTGGTTGATAGACAGCAACATGGTGTTACCAAGGTCTAAGGTTTCCTATCGAGCAAAACGTGGGCGCCGTGTTTTGGCTGGGGGGAGAATAACTCATGAAGGAATCAAGTGTGACTGTTGTTGCAGAATATACAGTCTTGTTTCCTTCGAATTTCATGCTTCTGGCATTAATACCACCAGACCAAGTGCTAGTATCTTTCTTGACGATGGTAGGTCGCTCTTATCTTTCCAGATGCAAATAATGCAAGATAAGTCAAAGGAGGCTATGGTAAAACCACTCAGTGTTTTGATTCAGGGTGAAAACGACTACATTTGTTCGGTTTGCCACTACGGGGGCGAACTTCTTTTGTGCGACAATTGCCCATCTTCATATCATAAGACGTGTCTTGGTCTGGAGGATGTTCCTGATGGTGAATGGTTTTGTCCATCATGTCATTGCGGGATTTGTGGACAAAGCAAATTCAATGTGGGTGCTGAGGATGGACATTTCCATACATGCATTCAGTGTGAACATAAATATCATGTTGCGTGCCTCAAAAGTAGAGATACAAGTAAATCTGGAAGTTATGTGGAAAGCCGGTTCTGCGGAAAAGACTGTGAAAAGTTATACGCAGGCCTTCAAAATCTGTTGGGAGAGCCATTTTCAGTGGGTGTGGATGGTCTAACATGGACATTGGTAAAGTGTATAGACTCTGAGAGTTGTGATCTTGATAGTAGTAAAAGTGGCTTATCGGCAGAATGTTACAGCAAACTCAATGTTGCTCTTTCGGTGATGCATGAATGTTTTGAGCCCCTAAAGGAATCCGCATCTTGTAATGATCTGGTGGAAGATGTTATATTCAGCAGATGGTCCGAACTTAATCGAATGAATTTCCGGGGTTTCTATACTGTACTTCTGGAGAAAAATGAAGATCTGGTCAGTGTGGCAACTATTAGGGTCCTTGGAGATAAGGTAGCTGAAGTACCTCTTGTTGCTACCAGATTTCATTATCGTCGACATGGAATGTGTCGCATATTAATGGATGAACTGGAAAAGAAACTCATGCAATTAGGAGTGGAGCGGCTCGTTTTGCCTGCTGTTCCAAGTGTGGCAGATACATGGACAGGCTGTTTTGGTTTTTCTAAGATGACAAACTTAGAAAGATCAAAATATCTGGATTATACTTTCTTAGATTTTCCCAGCACCATCATGTGCCAGAAGCTTTTGATGAAGATTCAATCTCCAGATTCAGTTTTGTTAATAGAGTTCCCACAAAAACATGATACTATCTCCGGAAGCAGTACTGCTAACAAGTCTCCGGTATCTGAAGTTGACCAAGCCGGAGAGATAGAGAAAAAAGAAATGCAGGACCAACAAATGTTGGATACTTCTGAAGGCAATAATGATAATCATGGCAGTGCTGTTATTGACTGTGTCACCATGGGGGAGCAACCAAGTCCTGAGAATCAACATTGCCAAGACGGAACCTCCACTTCACAGGGCACTTTTGAAAAGTTTAATGGCTTGTGTTACTCTAGAAGAAGGAAGGTGAAAAATCATGAGTAG 3399 0.4122 MEAFENSSSINPKPTFPQQKLQISERVEVRSFEEGFLGSWHPGTVIHCEKLNRYVRYENILNDDGLSHFVEEVTVSSVLDGNFGTPSIRGVIRPLPPLVEFEKCDLKYGLCVDVNYQEAWWEGVVYDHCDGMEERSVFFPDLGDEMKVGIHEMRITQDWDEVTEKWEQRGKWLFLELIEECERESYVPVSVKQIWYDVRQKVEFSAIEEWTLNVKKDLWRDMIMEVVGDYMAITLTEVLSALKLPELNLVELISNVDSNANLSEKENFEPIESVLPVEKDLSRFQNEVSCNGAGEEVSVAIGFEKKEHTSLTYFNSNRWERVIFSETEYCPDVVKQYILVSKDKTAMQSLKEKVLKHLAYLGWEIDVDRNKHYRYKPPPGDHCKKKPYYYSLIELCKVMQMESMHPTSDCLIPDVPLNPLEDIQNRDASPLVADKQAPPSVAAADEQAYCPQAIVEYHKQFGAKQKSKLISKVKRHLLAEGWTLIEPPPDNRRRGVVYISPQQRRFQSLITACKFYVEEIIPKLTISGMQPSNRSLVQKPSNRSSHLLPQEPEVHTIDTAAANKSRANRKRKRFRNSDDSLPKCQSNESTLRVLRSHKRVREASSSCLSNQKPLNVLSWLIDSNMVLPRSKVSYRAKRGRRVLAGGRITHEGIKCDCCCRIYSLVSFEFHASGINTTRPSASIFLDDGRSLLSFQMQIMQDKSKEAMVKPLSVLIQGENDYICSVCHYGGELLLCDNCPSSYHKTCLGLEDVPDGEWFCPSCHCGICGQSKFNVGAEDGHFHTCIQCEHKYHVACLKSRDTSKSGSYVESRFCGKDCEKLYAGLQNLLGEPFSVGVDGLTWTLVKCIDSESCDLDSSKSGLSAECYSKLNVALSVMHECFEPLKESASCNDLVEDVIFSRWSELNRMNFRGFYTVLLEKNEDLVSVATIRVLGDKVAEVPLVATRFHYRRHGMCRILMDELEKKLMQLGVERLVLPAVPSVADTWTGCFGFSKMTNLERSKYLDYTFLDFPSTIMCQKLLMKIQSPDSVLLIEFPQKHDTISGSSTANKSPVSEVDQAGEIEKKEMQDQQMLDTSEGNNDNHGSAVIDCVTMGEQPSPENQHCQDGTSTSQGTFEKFNGLCYSRRRKVKNHE* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3724 1132 ProSitePatterns Zinc finger PHD-type signature. 723 762 IPR019786 -
Tpr3g3724 1132 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 17 1074 - -
Tpr3g3724 1132 Pfam PHD-finger 722 764 IPR019787 -
Tpr3g3724 1132 Gene3D - 893 1025 - -
Tpr3g3724 1132 ProSiteProfiles Zinc finger PHD-type profile. 720 765 IPR019787 -
Tpr3g3724 1132 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 910 980 IPR016181 -
Tpr3g3724 1132 CDD NAT_SF 915 975 - -
Tpr3g3724 1132 Pfam Agenet domain 25 97 IPR008395 -
Tpr3g3724 1132 PANTHER PHD ZINC FINGER PROTEIN 17 1074 - -
Tpr3g3724 1132 SMART agenet_At_2 104 161 IPR014002 -
Tpr3g3724 1132 MobiDBLite consensus disorder prediction 1094 1115 - -
Tpr3g3724 1132 SUPERFAMILY FYVE/PHD zinc finger 698 763 IPR011011 -
Tpr3g3724 1132 MobiDBLite consensus disorder prediction 560 583 - -
Tpr3g3724 1132 Pfam Tify domain binding domain 646 697 IPR032308 -
Tpr3g3724 1132 MobiDBLite consensus disorder prediction 1090 1115 - -
Tpr3g3724 1132 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 875 1011 IPR000182 GO:0016407
Tpr3g3724 1132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 715 783 IPR013083 -
Tpr3g3724 1132 SMART PHD_3 764 818 IPR001965 -
Tpr3g3724 1132 SMART PHD_3 722 763 IPR001965 -
Tpr3g3724 1132 CDD PHD2_CHD_II 723 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3724 Tpr-Chr3 41570374 41576993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3724 30 963 PHD Transcription Factor Family AT5G58610 37.500 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr3g3724 Agenet 3.9e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3724 - - cam:101498411 1546.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3724 3 41570374 41576993 Tpr3g3724 3 41570374 41576993 ECH
Tpr3g3724 3 41570374 41576993 Tpr4g2721 4 30217249 30223463 PCT