Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3715 ATGCAATCACAATCTAACTCACAAATCAAACCAATGAACTCACTCAAACAAATTTTTCAAAACATTTTCTCAGATAACAGTAACATCATGCTTGCTGCTATCATTTCCTTATTACTTGTAATTCTCTTTGTTCTTCTTCTTCATCTTTATGCTAAATGGTTCTTGTCACAAGCACATGCTCAAGCACAAGCTCGTAGACGCCGTCGTCGAAGAACAACTGTTACTGTCTCTGATGTTCTTGGTCCTGCAAGGTTTCATCATTTCCATAGCTTCAACATTGAAGACTCACCTATGTCTAGCTCAAACACTAAAGGACTTGATTCTTCTATCATTGCTTCAATTCCTTTGTTTATTTATGCAGAAAAGATTCAAAAGAATGAAATTGAACAAGAACTTGAATGTGTTATTTGTTTGAGTGGTTTTGAAAATGGTGAAATGGGAAGATGTTTACCAAAATGTGGACATGGTTTTCATGTTGAATGTATTGATATGTGGTTGAATTCACATTCTAATTGTCCTATTTGTAGAGCTTCAATTGTTATTTTTGAGAATGATTCTTCAAGTAATGTTGATGGTTCTTCAAGTTTTGTTGAAATTGTGATTGATGAAAGTTCTAGTTCTGAGATTAGAGAGGGAGAACAAGGGAATGAAAATGATAATGGTAGAGTACAGAGTGATTCTGTTTCAGAAACTTCATCTTTGTTTGGTTGTTCTTTGAAGACAGTTTTCAGCAAAGTTTTTCCATCTTCCAATGTTAATGAATCATAA 768 0.3372 MQSQSNSQIKPMNSLKQIFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLSQAHAQAQARRRRRRRTTVTVSDVLGPARFHHFHSFNIEDSPMSSSNTKGLDSSIIASIPLFIYAEKIQKNEIEQELECVICLSGFENGEMGRCLPKCGHGFHVECIDMWLNSHSNCPICRASIVIFENDSSSNVDGSSSFVEIVIDESSSSEIREGEQGNENDNGRVQSDSVSETSSLFGCSLKTVFSKVFPSSNVNES* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3715 255 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Tpr3g3715 255 MobiDBLite consensus disorder prediction 204 227 - -
Tpr3g3715 255 CDD RING-H2_EL5_like 133 176 - -
Tpr3g3715 255 PANTHER - 10 252 - -
Tpr3g3715 255 SMART ring_2 134 175 IPR001841 -
Tpr3g3715 255 SUPERFAMILY RING/U-box 121 182 - -
Tpr3g3715 255 Pfam Ring finger domain 133 176 IPR001841 -
Tpr3g3715 255 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 252 IPR044675 -
Tpr3g3715 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 180 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3715 Tpr-Chr3 41463652 41464662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3715 21 222 Rapid Response to Elicitors AT3G16720 34.884 1.54e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3715 - - lang:109329145 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3715 3 41463652 41464662 Tpr3g3715 3 41463652 41464662 ECH
Tpr3g3715 3 41463652 41464662 Tpr4g2736 4 30553437 30554493 PCT