LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g3677	ATGGCTTTGACTGTTGATAATCGTAACATGTTTTCAAACATTGATGAGATCAATTCTGATAGATCAACTTGGAATTTGCAAGCAAAGATCATAAGACTTTGGCAAGTGAGTGATTTTAATCGAGCTAATGTTCCTTTTTCTGTTGAAATGGTGTTGATGGATTCAGATGGTGCTAAGATTCATGCCACTATAAAAAAAACTCTTATTTACAAGTTTAAACATGATTTAATTGAGGGAAAAGTGTATTCTTTTGAAAATCTTGGTGTGGCTTCCAATAATGGAGGTTATAGGACCACACATCATCCATACAAACTGAACTTCCAGTTTGGCTCATTTGTTCAAAGGTTGTCAAATTGTGACATTGTGAAATCTCCATTTACCTTTGTTCCAATTGCTGAAATTGTTGGTGGTTTATATGACACTGATTTCTTAGTTGATGTAATTGGTTTCTTAACCGAGATTGGCCAGGAACGTGAAATAACTAATCAAAATGGTAGCACAACAAAGCTGAATGTCATTTCCTTGGAAGCCGATGGGCATAAGCTTCAGTGTACACTTTTTGGTCCATATGTTGATGAACTGAATACCTTTGTTGGAGCTGGTGATCTAAACAATGCTGTGGTCATTGTTCAGCTTGCAAAAGCTAAGACCTTCCAAGACAAGATACACATACAGAATTGCATGAATTGTTCTGTTTTGCTATTTAACCCAAATTGTGAAGAAAGTCAGACCTTTAGGGCAAGTATCAGTGATTCCGACGAGAATCCTTCTCCATTGACCTTTACTCAACTCAGTAACGAGCCAACTGTATCCCCACTTGATGAGTTTCTGTACAATACTCCCAGGGCAACATTGCAAGATCTCAAGGATGCTACAAAGGAATCATCACATGTTGTATGTGCTACTGTGAAGAGGATTTTAAATCCTGATAGTTATTGGTATACATCGTGTTTTTGCGGTAAAGGTGTTATACCAGATTCAAATTTATGGTTTTGTGAAAAGTGTAATAGGCATGTTCCAAAGGTTGTTCCTAGGTTTTGTGTCAAACTCCGAGTCATTGATGATACTGATTCTGCCACTTTAGTTGTTTTTGACAAAGAAGCAAGTGGGATATTTAATATGTCTTGTGCCGATATGCTTCAACTTGGCGATGCTGATAATGATGGTGAGGGGATTGTGCCACCTCCGATTGATGACTCATTGGTTAATCAAACTTGGCTTTTTAAGGTTGAAGCTAAACCTTCTCAAAATCCACGATTTGAACAATCTTTTCGTGTTAGGAAGATTTGTACCGATGAGGCTATCATTAAGCAGTTTAAGGACAAGTGGGATATTGAGGATGCTCTACGTACTAAAAAAAGAAATGAGGGTGGTTCTTTGAGTACTCTGCTTGATAAAGGGAAAGATGTTTATGTTGGTGGTACCTCAAATGTACTTTCTCAGGAATGTCAAAACTTTAGTGGGGATTCTGATAAGGGAAAGGGTCTGATTGTCGATGGAACACCTGTTGAAGTTTCACAAAATTTGATGCTGAAATTTTCAGAATCTGTTGTAAATCTTGACGATGATTCTGTTAATACTCCTTTTTCTGTTAAGTCAATGACATCTGGAAAGAAGCAATTGACATCTGCTTCTGCTGTTAACCCAATGACCTCTGCATTGGCTGTGAAGCCAAATACCTCTGTTATTGATGTGAATGAGACGACCTCTGTTGCTGCTGTGAAGCCAATTCTCTCCGCCGGTCCTGTGAAGGCAACTACCTCTGCTGTGTTTACTCAACAATCTGCTTCTGCTGTCAAACCTCTGAACTCTGCTTCTGCTGATGATGTGAGCCTGAAATCTTCAGCCTCTGCTAGGCTATGTGGACAGCGCAAGAAGCCCGTGGCAAAGAGAGTGTCCCCTCAACATGAAGATCAAACAGCTGAAGATGACAATGCTCCTATCAAGTTATTGAAGAGGGCAATCAAGATTGAGAAGATCCCTTAA	1986	0.3907	MALTVDNRNMFSNIDEINSDRSTWNLQAKIIRLWQVSDFNRANVPFSVEMVLMDSDGAKIHATIKKTLIYKFKHDLIEGKVYSFENLGVASNNGGYRTTHHPYKLNFQFGSFVQRLSNCDIVKSPFTFVPIAEIVGGLYDTDFLVDVIGFLTEIGQEREITNQNGSTTKLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNAVVIVQLAKAKTFQDKIHIQNCMNCSVLLFNPNCEESQTFRASISDSDENPSPLTFTQLSNEPTVSPLDEFLYNTPRATLQDLKDATKESSHVVCATVKRILNPDSYWYTSCFCGKGVIPDSNLWFCEKCNRHVPKVVPRFCVKLRVIDDTDSATLVVFDKEASGIFNMSCADMLQLGDADNDGEGIVPPPIDDSLVNQTWLFKVEAKPSQNPRFEQSFRVRKICTDEAIIKQFKDKWDIEDALRTKKRNEGGSLSTLLDKGKDVYVGGTSNVLSQECQNFSGDSDKGKGLIVDGTPVEVSQNLMLKFSESVVNLDDDSVNTPFSVKSMTSGKKQLTSASAVNPMTSALAVKPNTSVIDVNETTSVAAVKPILSAGPVKATTSAVFTQQSASAVKPLNSASADDVSLKSSASARLCGQRKKPVAKRVSPQHEDQTAEDDNAPIKLLKRAIKIEKIP*	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g3677	661	SUPERFAMILY	Nucleic acid-binding proteins	280	417	IPR012340	-
	Tpr3g3677	661	Gene3D	-	119	258	IPR012340	-
	Tpr3g3677	661	Pfam	Replication factor-A C terminal domain	301	413	IPR013955	-
	Tpr3g3677	661	SUPERFAMILY	Nucleic acid-binding proteins	11	118	IPR012340	-
	Tpr3g3677	661	CDD	RPA1_DBD_B_like	146	248	-	-
	Tpr3g3677	661	Gene3D	-	277	437	IPR012340	-
	Tpr3g3677	661	MobiDBLite	consensus disorder prediction	630	645	-	-
	Tpr3g3677	661	CDD	RPA1_DBD_A_like	26	113	-	-
	Tpr3g3677	661	MobiDBLite	consensus disorder prediction	618	645	-	-
	Tpr3g3677	661	CDD	RPA1_DBD_C	283	413	IPR013955	-
	Tpr3g3677	661	Pfam	Domain of unknown function DUF223	49	144	IPR003871	-
	Tpr3g3677	661	Gene3D	-	9	115	IPR012340	-
	Tpr3g3677	661	PANTHER	REPLICATION FACTOR A 1, RFA1	22	380	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Tpr3g3677	661	SUPERFAMILY	Nucleic acid-binding proteins	126	250	IPR012340	-
	Tpr3g3677	661	PANTHER	ANIMAL RPA1 DOMAIN PROTEIN	22	380	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g3677	Tpr-Chr3	40961109	40964372	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g3677	14	376	Core DNA Replication Machinery Family	AT2G06510	22.632	1.11e-15	79.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g3677	-		-	mtr:MTR_4g036240	598.586