Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3635 ATGGAGATATCGTTGTTGAAAATGCTTGTTGACAGCATATCCTCATTTTTGCATTTATCATTTTCTGGAAACATGAACTCGGAACCAGTCTCAAAATATTACCAAAAGGCAGAGGAGGTACTTAAATTGTTGAAGCCGATCATTGATGCTCTTGCTAATTCTGAGCTAGCCTCTGACGAAGTGCTTAGTAAAACATCCGAAGAACTCGGTCATGCTGTTGATGAATTAAAGGAGCATGTTGAGAATTGGCACCTATTGTCTAGCAAAGTTTACTTTGTTATGCAAGTTGAACCCTTGATATCTAGGATTCGGACTTCAGGTCTCAAGGTCTTGCAGCAGCTGAAGGCTTCAAAGCAATTTCCCAATGATGAATTGAGTTCTGAACATTTGGAGTTTAAATTGCAGAACTGTATTCAGAAACTTAAGCTTTTAGGACTTGAGGAAACCTCATCCGTCATTAAGGAAGCTATTATGGAACAACTGGATGGTGCGGGACCTAGTTCAGAGATCCTGGAAAAAATTGCTGATAGCCTGAGCCTAAGATCTAACGAGGAGGTTCTGATTGAGGCTGTGGCCCTAGAGAAGTTGAAGGAGAATGCTGAACAGACTGAAAAGACTGCAGAAGCTGAATACATTGATCAAATTATTGCTGTTATAACGCGTATGCATGAGCGCCTCGTTATGCTTAAGCAAGCCCAGAGTTCCAGTCCTGTTCCAGTACCTGCTGATTTTTGTTGTCCTCTTTCTTTAGAGTTGATGACTGATCCGGTGATCGTGGCTTCAGGGCAAACTTATGAGCGGGCTTTTATCAAGAACTGGATTGATCTTGGTCTTACTGTTTGTCCAAAGACACATCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGAAACTGGTTGATCCCACAAAGTCAACAACCTTAAATCAAGCATCGATCCTTCATGGCTATATGGAGTCTGGCACAACCAGGGAATCTCCTCTTTTTCCTCATTCCAGGAGTAACCTGCCATCCTCACCTGAGTCCGCTCGTTCTCGTTCTTTTAGTTCGCCAGGTAATAACATACCTTCTTCAGGTGGAATCCAACGAGAGGGAACATCACCTGTGCACCCTCGTTCAACTTCAGAAGGTTCCTTGAGTGGTATAATTAATGGGCAATATATGGATGCTGCTAGAACATCACCCACGGCTTTAGACGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTCGATTCAATTGGCCAACCATCAATATCACCATCTAGAAGAGAATCTTCCGGTGCCTTCAGCTCCGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTATCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAGTTGTCAACAAGTCCAGGCTACAGTAGAGATACTTCTGGCGAATTAAATCCAGGGCTAGATGCTGCTGGTTCTGCTCCCATGCCATCAATGCAGAGAGAACCTGAGTTCCCACCCCGATTGATGGAGGCAAGGTCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTTGTTCCTAGGATAATATCTTCTGCTATTGAACCAAGAGTTGATCTTTCTGGTATTGAGGCACAGGTTCGGAGTTTAGTTGAGGGCTTGAGGAGCATTGATCTTGATATTCAGAGAGAGGCAACTACAGAAATCCGTCTTCTTGCTAAACACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAACATATTAGTCGACTTACTTAAGTCAGATGATTCAAGGATCCAGGAAAATGCTGTTACAGCACTTCTTAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCCGGTGCAATTGAACCGCTGATTCATGTTCTTGAGAACGGCAGCCCAGAAGCGAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTGTCGGTGATTGAGGAAAACAAGGTTAACATAGGGAGATCTGGGGCAATTAGACCACTTGTAGATTTATTAGGGAATGGAACTCCGAGGGGAAAAAAGGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCACGAGAACAAGAATCGGATTGTGCAAGCTGGTGCCGTAAAGCACCTTGTGGAGTTGATGGACCCAGCGGCTGGAATGGTTGACAAGGCTGTGGCTGTCTTAGCAAACCTTGCCACAATTCCAGAAGGAAGAATTGCAATTGGCCAGGAAGGTGGGATTCCTGTTCTAGTTGAAGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAACGCAGCAGCAGCTCTTCTTCATCTTTGCTTACACAGTAGTAGATTCTTAAGCATGGTGCTCCAACACGGAGCCGTACCACCATTAGTAGCTTTATCACAGTCAGGCACACCAAGGGCCAAAGAAAAGGCACAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGGAATTCTGGGAGGGGCTGA 2529 0.4365 MEISLLKMLVDSISSFLHLSFSGNMNSEPVSKYYQKAEEVLKLLKPIIDALANSELASDEVLSKTSEELGHAVDELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLKVLQQLKASKQFPNDELSSEHLEFKLQNCIQKLKLLGLEETSSVIKEAIMEQLDGAGPSSEILEKIADSLSLRSNEEVLIEAVALEKLKENAEQTEKTAEAEYIDQIIAVITRMHERLVMLKQAQSSSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLVDPTKSTTLNQASILHGYMESGTTRESPLFPHSRSNLPSSPESARSRSFSSPGNNIPSSGGIQREGTSPVHPRSTSEGSLSGIINGQYMDAARTSPTALDDRSASSDESSVDSIGQPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANYQETQGDDSNASQLSTSPGYSRDTSGELNPGLDAAGSAPMPSMQREPEFPPRLMEARSRSQAIWRRPSERLVPRIISSAIEPRVDLSGIEAQVRSLVEGLRSIDLDIQREATTEIRLLAKHNMDNRIAIANCGAINILVDLLKSDDSRIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLENGSPEAKENSAATLFSLSVIEENKVNIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSSRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3635 842 MobiDBLite consensus disorder prediction 408 450 - -
Tpr3g3635 842 MobiDBLite consensus disorder prediction 468 490 - -
Tpr3g3635 842 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 838 - -
Tpr3g3635 842 SUPERFAMILY RING/U-box 230 317 - -
Tpr3g3635 842 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 722 763 IPR000225 GO:0005515
Tpr3g3635 842 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 599 641 IPR000225 GO:0005515
Tpr3g3635 842 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 681 723 IPR000225 GO:0005515
Tpr3g3635 842 SMART Ubox_2 243 306 IPR003613 GO:0004842|GO:0016567
Tpr3g3635 842 Pfam U-box domain 240 310 IPR003613 GO:0004842|GO:0016567
Tpr3g3635 842 Coils Coil 183 213 - -
Tpr3g3635 842 ProSiteProfiles U-box domain profile. 239 313 IPR003613 GO:0004842|GO:0016567
Tpr3g3635 842 MobiDBLite consensus disorder prediction 338 393 - -
Tpr3g3635 842 CDD RING-Ubox_PUB 244 286 IPR045210 -
Tpr3g3635 842 Gene3D - 698 835 IPR011989 -
Tpr3g3635 842 Gene3D - 544 696 IPR011989 -
Tpr3g3635 842 PANTHER U BOX DOMAIN-CONTAINING 8 838 - -
Tpr3g3635 842 SUPERFAMILY ARM repeat 559 831 IPR016024 -
Tpr3g3635 842 SMART arm_5 670 710 IPR000225 GO:0005515
Tpr3g3635 842 SMART arm_5 588 628 IPR000225 GO:0005515
Tpr3g3635 842 SMART arm_5 711 750 IPR000225 GO:0005515
Tpr3g3635 842 SMART arm_5 629 669 IPR000225 GO:0005515
Tpr3g3635 842 SMART arm_5 542 586 IPR000225 GO:0005515
Tpr3g3635 842 SMART arm_5 751 791 IPR000225 GO:0005515
Tpr3g3635 842 Pfam Armadillo/beta-catenin-like repeat 629 668 IPR000225 GO:0005515
Tpr3g3635 842 Pfam Armadillo/beta-catenin-like repeat 590 627 IPR000225 GO:0005515
Tpr3g3635 842 Pfam Armadillo/beta-catenin-like repeat 672 709 IPR000225 GO:0005515
Tpr3g3635 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 320 IPR013083 -
Tpr3g3635 842 MobiDBLite consensus disorder prediction 468 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3635 Tpr-Chr3 40406818 40412723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3635 200 842 U-box Gene Family AT2G23140 61.751 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3635 - - gmx:100811250 1296.57