Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3609 ATGACTAGGAGGAAAGTGAATCTTGCCTGCATAACCGACGACTCAAAGAGAAGGGCAACATTCATCAAAAGAAAAAATGGTTTAGTCAAGAAGATGGATGAAATAACCACACTTTGTGGAGTTGAAGCATGTGCCATAATCTTCAGTGAAAATGATCCTCAACCAGTGATTTGGCCATCACCACGGGGGGTCCATACCGTGTTGTCAAGGTTTAGGAGGTTGCCTGAACTAGAACAAAGCAAAAAGATGCAAAATCAAGAGAGCTTCTTGAAGGAAAGGATACAAAAGGGACAAGAAAAACTGAAAAAACTAAGGAACGAGAATAGAAAAAAGGAACTGACCAATCTCATGTTTCAATGCCTTAATGCTGGCCAGATTACTGACAATGTTGGCATGAATGATCTCAATGGTCTCTCTTGGTTAATTGATCAAAATACGAGACAAATTGAAAGGTATATGGAAGAGAATAATGCACAAATTTCGTCTAAAATGCATGCATTACTTCCAACCCCCCCCCCCCCCCCCCCCCCGCCGGCGCCCTCTGCTGCGCAAAGAATTCCTGCAATATATGTTGGACCCGTAGGTCCACCCGGTCATCAAATGATGCTTCGAACTCATCGCGGAATTCTTCTCTATACGTGGCCCTCATTCGCGCTTCATACTCATCATCGGTTTCCTCTCTTTGAGTTGGACGAGAGCGTCCTGTACTCGATGAAGATGAAGATGTGTAAGTGA 735 0.4381 MTRRKVNLACITDDSKRRATFIKRKNGLVKKMDEITTLCGVEACAIIFSENDPQPVIWPSPRGVHTVLSRFRRLPELEQSKKMQNQESFLKERIQKGQEKLKKLRNENRKKELTNLMFQCLNAGQITDNVGMNDLNGLSWLIDQNTRQIERYMEENNAQISSKMHALLPTPPPPPPPPAPSAAQRIPAIYVGPVGPPGHQMMLRTHRGILLYTWPSFALHTHHRFPLFELDESVLYSMKMKMCK* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3609 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g3609 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g3609 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr3g3609 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 183 - -
Tpr3g3609 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g3609 244 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Tpr3g3609 244 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Tpr3g3609 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 183 - -
Tpr3g3609 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Tpr3g3609 244 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Tpr3g3609 244 Coils Coil 87 114 - -
Tpr3g3609 244 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3609 Tpr-Chr3 40050798 40056996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3609 1 154 Type I MADS-box Gene Family AT5G48670 50.000 1.99e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g3609 SRF-TF 9.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3609 - - gmx:100816084 201.83