Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3608 ATGGACAAAGTCATATCAAATTGGACAATGGAATTTCTCCTTCAAAGCTTCGTTCCCGATTCACTCATTGAGAAAACCCTAACCGTTCTTCCACATTCCACCGCCGATTCTCGCCTCAAAATAGCACTCCTCCTCCGCACCCTTCAAACTTCCCTCCTCAACGCTTCCCTCTCCGAAACCTCTCTCGAAATCCTCGAACACCTCGAAAGCCTTTACCACACCGATGCTATTCCAATCTTGGATTCAATGCGCAGTGCTTACTGCGCTGTTTCGGTGGAAAGCACCGTCAAGTATCTTATTGCTAGTCCTGAAGGTCCCTCCGGTGAGTACTATTCTGCTGTCCGACGGATCTGGCATGAAAGGGTTGATAAATTGTCGGAGGAGGGACGAAGGAGTGAGCTTTTGTCTGATGAGTTGGATCAGTGGAGGCAAGAAGTTGAAGCTGCGCTTTGGCATGTTAGGGTTTCCGAGAGGCTTGTGGGGTTGAATACAAGGAGAGATGCGATGAATGAAATGAAGAGGTTTTTGAAAGAAGCGTGGGAAACTATTGGACTTTCGTATATTGATTCGGTGGAGACAGTTTCTGTCGGGAATGGTTTGCGCCATGAAGGTGTTTGTGAAAATGCTTCGGCTTCGGGTAGTGAAGTGTCGAAGAAGTGTGATGGAAGGTTAGAAGGTTTGGAAAAGGAAAAAATGAACTCTGGTTGTCAAGATGAGGATGAGAATGAGAATGAGAATGAGAATGACAATGAGAAGAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGAATAAGAATAAGAATGAGAATGAGAATGAGAATGAGAATGGTGATGTGGCAACAATGCAGGAAAATCATGGCAATGAGCAATTGGAAGAGAGAGTTGGCACTTCTTGTGATGCAAATCAGGAAGTGGGTGAGTGTGATTCTTCAAAGGGAGATAAAGAAATCCGGAAAGACAATCATCAACTCAAACGCAAGCGCTCTGCAATTCGAACATACCATGCGGGAGTTAGAATCTCTGATGCTGAAGAAGCGCCTGAGGAAGCGAAAACAACAAATTTGTCCTGTAAATGTGAAAACTTGCCGAGTGCTGAAGTAAAGAAAGTTCGGGAGTCCCTTAGATCAAGTTCTATGGAGTTAAAAGCAATGGTCAAGGATCCTCTTCCTGATGCATTGCACACATCGGAAGCTGTAAGATCCAAATTGGCTACAAAAGATATAAATCGCAGCCCACCCATCGAAAACCAGAGTGGACATGTAGATGCACCAGATTCAACTGCATGCAAGACTATTGTACTTTATCAGCATAATGACGTCAATCCTGGGAAGAAGTCTTCTGTTCATTGTAGTAGTAGTCGTCGTCTTCGCCCCAAGCTAATGGAACGAGGAAATTCTGCTCATACTTTTGAGTGGGATGATTCAATAGAAAACAAACCGAACGTAATACAGCCAAAAAAGAAGAAAAGGAGATGGACTTCATTGGAAGAGGATACATTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGAAAGATATCCGAGAATTTTACAGCAACATATTTGAATTTAGAAGTGCTGGTGATCTGAAGGACAAGTGGAGAAATTTGATTCGGTGA 1626 0.433 MDKVISNWTMEFLLQSFVPDSLIEKTLTVLPHSTADSRLKIALLLRTLQTSLLNASLSETSLEILEHLESLYHTDAIPILDSMRSAYCAVSVESTVKYLIASPEGPSGEYYSAVRRIWHERVDKLSEEGRRSELLSDELDQWRQEVEAALWHVRVSERLVGLNTRRDAMNEMKRFLKEAWETIGLSYIDSVETVSVGNGLRHEGVCENASASGSEVSKKCDGRLEGLEKEKMNSGCQDEDENENENENDNEKNENENENENENENKNKNENENENENGDVATMQENHGNEQLEERVGTSCDANQEVGECDSSKGDKEIRKDNHQLKRKRSAIRTYHAGVRISDAEEAPEEAKTTNLSCKCENLPSAEVKKVRESLRSSSMELKAMVKDPLPDALHTSEAVRSKLATKDINRSPPIENQSGHVDAPDSTACKTIVLYQHNDVNPGKKSSVHCSSSRRLRPKLMERGNSAHTFEWDDSIENKPNVIQPKKKKRRWTSLEEDTLRAGVKMFGEGNWKDIREFYSNIFEFRSAGDLKDKWRNLIR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3608 541 Pfam Myb-like DNA-binding domain 490 539 IPR001005 -
Tpr3g3608 541 MobiDBLite consensus disorder prediction 259 274 - -
Tpr3g3608 541 PANTHER MYB TRANSCRIPTION FACTOR 1 541 - -
Tpr3g3608 541 MobiDBLite consensus disorder prediction 290 329 - -
Tpr3g3608 541 Gene3D - 483 541 - -
Tpr3g3608 541 SUPERFAMILY Homeodomain-like 487 540 IPR009057 -
Tpr3g3608 541 MobiDBLite consensus disorder prediction 229 274 - -
Tpr3g3608 541 MobiDBLite consensus disorder prediction 404 424 - -
Tpr3g3608 541 MobiDBLite consensus disorder prediction 239 258 - -
Tpr3g3608 541 Coils Coil 236 286 - -
Tpr3g3608 541 CDD SANT_TRF 491 541 - -
Tpr3g3608 541 SMART sant 489 541 IPR001005 -
Tpr3g3608 541 ProSiteProfiles Myb-like domain profile. 485 540 IPR001005 -
Tpr3g3608 541 MobiDBLite consensus disorder prediction 308 324 - -
Tpr3g3608 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 485 541 IPR017930 -
Tpr3g3608 541 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3608 Tpr-Chr3 39985499 39992028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3608 452 540 Single Myb Histone (SMH) Gene Family AT1G15720 40.000 1.01e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr3g3608 Myb_DNA-binding 3.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3608 - K11111 aprc:113849788 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3608 3 39985499 39992028 Tpr3g3608 3 39985499 39992028 ECH