Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3588 ATGTCGTATGTTCCTCCACACTTGAGAAACGCCGGTTCAACCACCACCACCACTACCACCGCCGCAACTAGACTTTCATCAACCGGAACCCTAGACAACAACCACCACCACCATCATCACAACAACAACAACCTCGCATTCTCTAACTCACATTCCAATACTCCTTCTCTCTTCAATGCCTCTCGCCGTACCTCCGCCGCTCCTCCGCAGTCGCGGATTAACGCCGTTCCTGATACTGTTTTCCCTAACTGGCAACCTTCTGAACGTGTTTCTCGCATGAACCCTGACATGATTGAAGAGGTCCGCTTACGGCTTAATCTTGATGTTACTGTTTCGTCTGACTCTCCTGCTGCACCTGGACCTATAGAATCGTTTAATGATATGTGTTTGAATCCAAGTATCATGAAGGACATTGCTTATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCTATTGCTCTCAGTGGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGTGGGAAGACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGTCCAGCCTCCAATTCGGAGAGGAGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAGCAAATAGAAAAAGAGGTCCAAGCTTTTAGCAGGTCTCTCGAGTCATTAAAAACTGCCATAGTTGTAGGTGGTACTAACATTGAAAAGCAGAGATCGGAACTAAGAGCAGGAGTTGAAATAGCAGTTGCCACCCCTGGGAGATTCATTGACCACTTACAACAAGGCAACACTTCTCTCTCAAGAATTTCTTATGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGGGAGATAATGAGAAGTCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCAACTATGCCTGTGGAGATCGAAGCATTATCAAAGGAGTACTTAACTAACCCCGTGCAAGTTAAGGTGGGAAAAGTGAGCAGTCCAACAACTAATGTTTCACAAACTCTTGTAAAGGTTTCTGAAAGTGAGAAGATTGACCGACTCCTAGATTTACTTGTAGAGGAGGCATCACAAGCTGAAAAGTGTGGTCATCCATTTCCATTGACAATTGTGTTTGTTGAGAGAAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGGTTGCTCAGGGATTATCCGCAGTTTCTCTGCATGGTGGACGCAGTCAGAGTGAAAGAGAGGCTGCTTTGCATGACTTTCGGAGTAGCTCAACCAGCATTTTGGTTGCCACCGATGTTGCATCTCGGGGTTTGGATGTCACAGGAGTGTCACACGTCATAAATCTTGATCTTCCAAAGACCACAGAAGATTATATACACCGGATTGGAAGGACGGGACGAGCAGGATCAACTGGCATAGCCACTTCCTTTTACACAGATCGTGACATGTTCCTTGTGTCAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAACGCTGTGGCATTCGCTACTGGAAAGGTTGCCAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACACAAAGAGGCAAACATTGCTTTATCTAGACACCTTGGATCAGGAGCAGCTTCAATTAACATTGAAGATAAGTATAGATTCATGATTACTGCCACAAACAGTAAAAGAGAGGGTGCAGCAGATAGTGCATGGGATGATTGA 1707 0.454 MSYVPPHLRNAGSTTTTTTTAATRLSSTGTLDNNHHHHHHNNNNLAFSNSHSNTPSLFNASRRTSAAPPQSRINAVPDTVFPNWQPSERVSRMNPDMIEEVRLRLNLDVTVSSDSPAAPGPIESFNDMCLNPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALSKEYLTNPVQVKVGKVSSPTTNVSQTLVKVSESEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFLVSNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIALSRHLGSGAASINIEDKYRFMITATNSKREGAADSAWDD* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3588 568 CDD DEADc 134 331 - -
Tpr3g3588 568 MobiDBLite consensus disorder prediction 1 20 - -
Tpr3g3588 568 Pfam DEAD/DEAH box helicase 147 317 IPR011545 GO:0003676|GO:0005524
Tpr3g3588 568 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Tpr3g3588 568 Gene3D - 84 334 IPR027417 -
Tpr3g3588 568 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 26 533 - -
Tpr3g3588 568 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 512 IPR001650 -
Tpr3g3588 568 Pfam Helicase conserved C-terminal domain 354 471 IPR001650 -
Tpr3g3588 568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 491 IPR027417 -
Tpr3g3588 568 SMART helicmild6 390 471 IPR001650 -
Tpr3g3588 568 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 330 IPR014001 -
Tpr3g3588 568 CDD SF2_C_DEAD 342 480 - -
Tpr3g3588 568 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 533 - -
Tpr3g3588 568 Coils Coil 209 229 - -
Tpr3g3588 568 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 276 284 IPR000629 -
Tpr3g3588 568 SMART ultradead3 142 345 IPR014001 -
Tpr3g3588 568 Gene3D - 336 529 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3588 Tpr-Chr3 39749742 39757943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3588 123 493 Eukaryotic Initiation Factors Gene Family AT1G72730 35.733 7.51e-71 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3588 K12823 - gmx:100818387 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3588 3 39749742 39757943 Tpr3g3588 3 39749742 39757943 ECH