Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3582 ATGATCCCACAACAAGAATCAGAGTTTGATATTGGTTATCTCAAACCATATTACGGAAAGCTGTTTCCTTATGCTGATATGTTTAAATGGATGTCTTACGGCCACGATGGGAAACATCCTGGTTGTGATCAGTCCTACTTTGGAAGGAGGGAATTTTCCTTCACTCTGAAAGGTGATTTTTATCTGCGCTTCCAATCCTTCAACAGTGCACTTGAGCTTGAAAACTCCATCAAAGAAAAATGCCCTTTAAAGATTGACATTGGACCTGTCTACACAGTCGATCCTGCAAAAAGGCATGCCTATGCACAGGGTGATAATAAAGTCTTCACTCCAGTTGAGAGGGAGTTGATTTTTGATATAGATATGACAGATTATGATGATGTCAGATACTGCTGCAAGGGTGCTGATGTTTGCTTGGATTGCTGGCCATTGATGACCATAGCCATCAAAGTGATTGATGCTTCCTTAAGAGATGACTTTGGTTTTAAGCACATACTCTGGGTCTATAGTGGACGCAGAGGTGTTCATTGTTGGGTGTGTGATGGGAAGGCAAGAAGGTTGACTAATGAGCAAAGAGCTTCTATTGCTGACTATTTTCGTGTTTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCCTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCGACATCATACACCAACGTTCTCAAGGACTATTTTGAGAAAATATTGCTTACAAATCAAAACTTACTTGCTACTGAGGAGAGATATGAGAAGATCCTAAGCATGATTCCTGATGAATCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAACAATAGGAGGTCCTCTAGTGCAAAAGAAGATATTAATGTTGTGCGATGGGAACAGTGCAAGCAGCTGCTGCAATCTGGAAAACATAAGGCACAAGGGTTGCGTAGATGCGTTGAAGAGATTGTGTTCTTCTTTACTTACCCCAGGCTAGATATGGAGGTTTCAAAACATATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCAAAAACAGGTCGTGTCTGTGTCCCTATTGACCCAAATCGGTGTGACGAGTTTGATCCCACTACAGTACCTACCCTTTTTCAGCTTCTAGAAGAGCTTAATAATGAAGGCTTGAGAGCTGATGTTAATGGTGAATGGAGTGGAACTTCACTTGGAAGTGCCGTCACACTTTTCAGATCATCATTCTTAGAACCTTTGCTAAAAGCCTGCAAGGAGGAGATAGAAAGGTCCTATAGTTTAAAGTTGCAGCAGTCAAAGAACTCCATAGGTTGGTAG 1305 0.4123 MIPQQESEFDIGYLKPYYGKLFPYADMFKWMSYGHDGKHPGCDQSYFGRREFSFTLKGDFYLRFQSFNSALELENSIKEKCPLKIDIGPVYTVDPAKRHAYAQGDNKVFTPVERELIFDIDMTDYDDVRYCCKGADVCLDCWPLMTIAIKVIDASLRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRASIADYFRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKDYFEKILLTNQNLLATEERYEKILSMIPDESIASELRGRWQDNNRRSSSAKEDINVVRWEQCKQLLQSGKHKAQGLRRCVEEIVFFFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCDEFDPTTVPTLFQLLEELNNEGLRADVNGEWSGTSLGSAVTLFRSSFLEPLLKACKEEIERSYSLKLQQSKNSIGW* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3582 434 Pfam DNA primase small subunit 118 354 IPR002755 GO:0003896|GO:0006269
Tpr3g3582 434 Gene3D DNA primase, PRIM domain 2 415 - -
Tpr3g3582 434 PANTHER DNA PRIMASE 20 434 - -
Tpr3g3582 434 PANTHER DNA PRIMASE SMALL SUBUNIT 20 434 IPR014052 GO:0003896|GO:0006269
Tpr3g3582 434 SUPERFAMILY Prim-pol domain 9 378 - -
Tpr3g3582 434 CDD AE_Prim_S 38 363 IPR014052 GO:0003896|GO:0006269
Tpr3g3582 434 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 15 371 IPR014052 GO:0003896|GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3582 Tpr-Chr3 39703892 39710995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3582 3 434 Core DNA Replication Machinery Family AT5G41880 67.206 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3582 K02684 - gmx:100780574 788.104