Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3574 ATGCAAAGGTATAAAAGGAACACCACCCTCTTACCCTTTCCCTCCATTTTCAATCTTTCTTTCAGTTTCACACAACAACAATCAACCATGGGAAGAAGACCGGCAAGATGTTATCGGCAGATAAAGAACAAACCATACCCAAAGTCACGATTCTGCCGCGGGGTTCCGGATCCAAAGATCAGAATCTATGACGTAGGAATGAAGAAAAAAGGCGTAGACGAGTTCCCATTATGCGTTCACTTAGTATCATGGGAGAAAGAAAACGTGTCTAGCGAAGCACTAGAGGCAGCAAGAATCGCGTGCAACAAGTACATGTCGAAGTTTGCTGGGAAAGACGCGTTTCATTTGCGAGTGAGGGTTCATCCTTTCCATGTGTTGCGGATTAATAAGATGTTATCGTGCGCTGGGGCGGATAGGTTGCAGACGGGGATGAGAGGTGCGTTTGGGAAACCGTTAGGGACGTGTGCTAGGGTTAGTATTGGTCAGGTGCTGTTGTCTGTTAGATGTAAGAATGGTAATGGTCATCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAGAAAATTATTGTTAGCAGAAAGTGGGGATTTACTAAATTGAGTCAAGATGAGTACTTGAAGTTGAAATCCGAGAACAGAATTGTGCAGGATGGGGTAAATGCCAAGGTTCTTGGCAGCCATGGACCTTTGGCCAATCGTGCGCCTGGAAGAGCTTTCTTGCCAATGTATGCATAG 750 0.4573 MQRYKRNTTLLPFPSIFNLSFSFTQQQSTMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPLCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVSIGQVLLSVRCKNGNGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKLSQDEYLKLKSENRIVQDGVNAKVLGSHGPLANRAPGRAFLPMYA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3574 249 ProSitePatterns Ribosomal protein L10e signature. 137 158 IPR018255 GO:0003735|GO:0005840|GO:0006412
Tpr3g3574 249 SUPERFAMILY Ribosomal protein L16p/L10e 33 202 IPR036920 GO:0003735|GO:0005840|GO:0006412
Tpr3g3574 249 TIGRFAM uL16_euk_arch: ribosomal protein uL16 30 203 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr3g3574 249 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 30 246 - -
Tpr3g3574 249 CDD Ribosomal_L16_L10e 70 195 IPR016180 GO:0003735|GO:0005840|GO:0006412
Tpr3g3574 249 Gene3D Ribosomal protein L10e/L16 30 244 IPR036920 GO:0003735|GO:0005840|GO:0006412
Tpr3g3574 249 PANTHER 60S RIBOSOMAL PROTEIN L10 30 246 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr3g3574 249 Pfam Ribosomal protein L16p/L10e 41 195 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3574 Tpr-Chr3 39565421 39567583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3574 30 245 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.574 5.48e-141 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3574 K02866 - gmx:100779884 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3574 3 39565421 39567583 Tpr3g3574 3 39565421 39567583 ECH