Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3526 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACAACATGAAGGAGGAGGAGGGGAGAAGAAATGTCTGAATTCTGAGCTATGGCATGCATGTGCGGGACCGTTAGTGTCCCTACCGACCGCGGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTATCTGCCACAACTAACCGAGAAATTGATGGGCACATACCAAATTACCCTAGCTTGCCACCTCAGTTGGTTTGCCAACTTCACAATGTCACAATGCATGCAGATGTTGAAACGGATGAAGTATATGCTCAAATGACACTACAGCCGTTGACTCCGGAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAACTATTTTTGCAAGACTTTAACGGCCAGTGACACTAGCACACATGGAGGATTCTCTGTTCCTCGCCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCACCGGCACAAGAACTAATTGCTAGGGATCTCCATGACGTTGAATGGAAGTTTCGTCATATTTTTCGGGGACAGCCAAAACGGCACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTCGCTGGAGATTCCGTGCTTTTCATATGGAATGAGAAGAATCAGCTCCTTTTGGGAATACGTCGAGCCAATCGACCGCAAACTGTGATGCCATCATCAGTTCTGTCCAGTGATAGTATGCACATTGGACTTCTTGCGGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACTGTCTTCTATAATCCAAGGGCTAGTCCATCCGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATCTCTGTTGGTATGCGCTTCAGGATGCTTTTCGAGACCGAAGAGTCAAGTGTCCGCAGATACATGGGTACAATAACTGGCATAAGTGATCTGGATGCTGTTCGATGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTATCGTTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCATTGTTCCCCCTCAGATTGAAACGCCCGTGGCATCCTGGCACCTCATCTTTACTTGATGGAAGAGATGAAGCAAATGGTCTAATGTGGATGAGAGGTGGACCTGCAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGCGCTTCTGGTTTATTACCCTGGATGCAGCAGAGACTCGATCCAACTTTACTCGGAAGTGATCAGAGTCAACAATACCAAGCAATGTTGGCAGCTGGATTGCAGAACATGGGTAGTGGTGGATATCTCATGAGGCCACAAATGATGAATTTTCAACAGCAGCCTATCAATTACCTTCAATCAGGAAACAATAACTCGTCTTTGCAACTTCAGCAGCCTCAAATAATTCAACAAACAGTTAATATGATGCCGCAGCCACAAGCCCAAGTACTTACAGAAAACCTGTCTCAGCTACTTCAGAAACCAAATAACAATCAAGAAGTGCAAGCTCAACAGCAGCAACATAGTTATCAAGATACACTTCTAATTCAAAATGATCAGCTCCATCAGAGACAACAATCGAACTTGCCGTCACCATCGTATTCAAAACCAGATTTCCTTGAGCGAAACATAAAGTTCTCTGCTTCAGTTCCGTCCGGACAAAACATGCTTGGTTCGCTTTGCCCTGAAGGAACTGGTAATCTCTTGAATCTATCAACTCTATCCAGAAGTGGTCAGTCGTTGATGACTGAACAGTTACCCCAACAATCATGGACTCCGAAGTATGGAAACATGCAAGTCAATGTGTTTGGCAGCTCAATGTCGCATGCACAATATTCTGGAAAAGAATCCGGGATGGTGTCCTCACATTGTGATTCAGATGCCCAAAACCATACTCTCTCGGGTGTCAATATCGATTCATCTGGCCTTCTGCTCCCCACCACTGTCCCAGGTTACACTACTTCATCGGCTGACACTAGTGCATCAACTATGCAACTAGGGGAGTCAGGATTTCAGGGTTCTCTATATGCCTGCATTCAAGATTCATCGTCATTTTTGCAAAATGCAGAGCAAAACGACCCACAAAACCAGAACCCAACATTTGTGAAGGTTTACAAATCGGGATCGGTTGGGCGTTCACTTGACATCTCTCGGTTCAACAGCTATCGTGAGCTGCGAGAGGAGTTGGGTCAGATGTTTGGAATTGAGGGAAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTCGACCGGGAGAATGATGTTCTTCTCCTTGGCGACGATCCGTGGGAATCATTTGTGAATAACGTTTGGTATATCAAAATACTTTCACCGGAAGATATTCAGAAGATGGGAGAACAAGCGGTAGAAACGCTTGCGCTAGGTTCAGTACAAAGGCTTAACGGCAGTGGTGAATCTCACCACATTGTTTCTGGACAACCACCATCAATTGGCTCACTTGAATACTGA 2547 0.4566 MKLSTSGLGQQGQHEGGGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGHIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLTPEEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLLDGRDEANGLMWMRGGPADQGLNSLNFQGASGLLPWMQQRLDPTLLGSDQSQQYQAMLAAGLQNMGSGGYLMRPQMMNFQQQPINYLQSGNNNSSLQLQQPQIIQQTVNMMPQPQAQVLTENLSQLLQKPNNNQEVQAQQQQHSYQDTLLIQNDQLHQRQQSNLPSPSYSKPDFLERNIKFSASVPSGQNMLGSLCPEGTGNLLNLSTLSRSGQSLMTEQLPQQSWTPKYGNMQVNVFGSSMSHAQYSGKESGMVSSHCDSDAQNHTLSGVNIDSSGLLLPTTVPGYTTSSADTSASTMQLGESGFQGSLYACIQDSSSFLQNAEQNDPQNQNPTFVKVYKSGSVGRSLDISRFNSYRELREELGQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVETLALGSVQRLNGSGESHHIVSGQPPSIGSLEY* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3526 848 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Tpr3g3526 848 ProSiteProfiles PB1 domain profile. 722 806 IPR000270 GO:0005515
Tpr3g3526 848 SUPERFAMILY DNA-binding pseudobarrel domain 115 260 IPR015300 -
Tpr3g3526 848 Gene3D - 295 367 - -
Tpr3g3526 848 SMART B3_2 131 233 IPR003340 GO:0003677
Tpr3g3526 848 Pfam AUX/IAA family 711 806 IPR033389 -
Tpr3g3526 848 PANTHER AUXIN RESPONSE FACTOR 1 833 - -
Tpr3g3526 848 CDD B3_DNA 130 231 IPR003340 GO:0003677
Tpr3g3526 848 Gene3D - 718 811 - -
Tpr3g3526 848 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Tpr3g3526 848 Gene3D - 129 232 IPR015300 -
Tpr3g3526 848 SUPERFAMILY CAD & PB1 domains 720 796 - -
Tpr3g3526 848 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr3g3526 848 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 833 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3526 Tpr-Chr3 39111271 39120378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3526 101 814 B3 DNA Binding Superfamily AT5G37020 66.986 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr3g3526 AUX_IAA 1.4e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3526 - - gmx:100784373 1423.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3526 3 39111271 39120378 Tpr4g3036 4 35528086 35537024 PCT