LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g3524	ATGCGACGACAACAACTCAACCTCCTAATAACTACCTTAATCACCTTATTGTGTTCATGGAACCTAACACAAGCTGATCCTCAAACACGTTTAATAAACAAAGGTTGTAGCACATACAACGCAACAAACTTATCAAATTTCTACCAAAATCTAAACGCAACTTTGTTAGACTTAAAATCACAAATAGGAAATGAAAACAAGCATTTTGCAACGGCACAATCAGCTAAAGGAGCAAATCCTGTTTATGCTTTGTTTCAGTGTAGGAATTATCTCTCTAATTCTGATTGTTCAGCTTGTTTCGCTGTTGCCGCTGCACAAATCCGGAATTGCTCCGCTGGTTCCAACGGTGCTCGTGTTATTTATGATGGTTGCTTCCTTAGGTATGAGAGCAATGGATTCTTCGACCAAACAACTCTACCTGGCAACAGTGTTCTTTGTGGAACCAAAACAGCAAATGGAGCCACTACTTTTAATGCAGCTGCACAACAACTACTATTGGATCTACAAACAGCAACACCAAAAATTCCTGGTTTCTTTGCAGCTACCAAAACACCAGTTGCTGGAAATGCAATCTATGCTATTGCACAATGTGCTGAAACAGTTACTGAAAGTGGTTGTTTAGATTGCTTAACTGTTGGATTCACCAACATACAAGGTTGTTTTCCTAATACAGATGGTGAAGCATTTGATGCTGGTTGTTTTATGAGATACTCAGAGAAATCTTTCTTTGCTGATAATCAAACCATTGATATCACACCCTTCTTGAAACAAGCAAGTTCAAGTAAGAAGGGAGCAATTATTGGTGGTGTTGTTGGAGGTGTAGTCCTTGTTCTGATCCTCCTTGTACTATTTGTTTGGCTTAGGCTCAAGAAGAAACCCAAGAGACGTCGTAGAGGTGACATATTGGGAGCAACTGAGTTAAGAGGTCCGGTTACTTACCGGTATAATGATTTGAAGTCTGCAACAAAAAATTTTAGTGATGAAAATAAATTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTAAAAAATGGTAATGTAGTAGCTGTCAAGAAATTGATTTTAGGCCATTCCGGAAAGATGGATGAACAATTTGAAAGTGAAGTGAAGCTTATAAGTAATGTTCATCACAGGAATTTAGTTCGACTTCTCGGATGTTGTAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAACAGCCTTGACAAATTCTTATTTGGTGAAAAGAAGGGTTCCCTGAACTGGATGCAAAGGTATGATATAATTTTAGGCACGGCAAGAGGTTTGGCCTATCTGCACGAGGATTTCCATGTTTGCATTATACATAGGGATATAAAGACTGGCAACATTCTCTTAGACGATGATCTTCAGCCTAAAATTGCTGATTTTGGGTTGGCAAGGCTTTTACCAGAAGATCAATCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACTGCACCAGAATATGCAATACATGGTCAGTTATCAGTGAAGGCTGATGCCTACAGTTTTGGTGTTGTAGTCCTAGAAATCATAAGTGGCCAAAAGAGCAGTGAGTTGAGGGAAGATGCTGATGGTGAATTCCTTCTTCAAAGGGCATGGAAACTATACGAGGTAGATAGACACTTGGAGTTAGTTGACAAGACATTGAACCCTAGTGACTATGATGCAGAAGAAGTGAAAAAAGTTATAGCAATTGCTTTACTTTGCACTCAAGCAACAGCTTCTACAAGACCAACTATGTCTGAAATAGTAGTTCTATTCAAAAGCAAGAACTTTGTGGAGCATATGAAACCAACTATGCCTGTCTTTGTTAACTCTAACTTGAGGCCTCAGAGTCGGACAGACACATCTACCTCGACTGCTTCTTCTACATCTAATGCTACTGTTTCCACTTCTATATTATCAGCTAGATGA	1941	0.3916	MRRQQLNLLITTLITLLCSWNLTQADPQTRLINKGCSTYNATNLSNFYQNLNATLLDLKSQIGNENKHFATAQSAKGANPVYALFQCRNYLSNSDCSACFAVAAAQIRNCSAGSNGARVIYDGCFLRYESNGFFDQTTLPGNSVLCGTKTANGATTFNAAAQQLLLDLQTATPKIPGFFAATKTPVAGNAIYAIAQCAETVTESGCLDCLTVGFTNIQGCFPNTDGEAFDAGCFMRYSEKSFFADNQTIDITPFLKQASSSKKGAIIGGVVGGVVLVLILLVLFVWLRLKKKPKRRRRGDILGATELRGPVTYRYNDLKSATKNFSDENKLGEGGFGDVYKGTLKNGNVVAVKKLILGHSGKMDEQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDKFLFGEKKGSLNWMQRYDIILGTARGLAYLHEDFHVCIIHRDIKTGNILLDDDLQPKIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSVKADAYSFGVVVLEIISGQKSSELREDADGEFLLQRAWKLYEVDRHLELVDKTLNPSDYDAEEVKKVIAIALLCTQATASTRPTMSEIVVLFKSKNFVEHMKPTMPVFVNSNLRPQSRTDTSTSTASSTSNATVSTSILSAR*	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g3524	646	Gene3D	Single helix bin	256	294	-	-
	Tpr3g3524	646	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	446	458	IPR008271	GO:0004672\|GO:0006468
	Tpr3g3524	646	MobiDBLite	consensus disorder prediction	615	646	-	-
	Tpr3g3524	646	ProSitePatterns	Protein kinases ATP-binding region signature.	331	354	IPR017441	GO:0005524
	Tpr3g3524	646	Pfam	Salt stress response/antifungal	36	130	IPR002902	-
	Tpr3g3524	646	Pfam	Salt stress response/antifungal	150	239	IPR002902	-
	Tpr3g3524	646	SMART	serkin_6	325	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr3g3524	646	ProSiteProfiles	Gnk2-homologous domain profile.	139	242	IPR002902	-
	Tpr3g3524	646	ProSiteProfiles	Gnk2-homologous domain profile.	29	133	IPR002902	-
	Tpr3g3524	646	Gene3D	Transferase(Phosphotransferase) domain 1	402	609	-	-
	Tpr3g3524	646	ProSiteProfiles	Protein kinase domain profile.	325	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr3g3524	646	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	23	642	-	-
	Tpr3g3524	646	Pfam	Protein tyrosine and serine/threonine kinase	328	594	IPR001245	GO:0004672\|GO:0006468
	Tpr3g3524	646	Gene3D	Phosphorylase Kinase; domain 1	295	401	-	-
	Tpr3g3524	646	Gene3D	-	142	242	IPR038408	-
	Tpr3g3524	646	Gene3D	-	28	133	IPR038408	-
	Tpr3g3524	646	CDD	STKc_IRAK	331	593	-	-
	Tpr3g3524	646	SUPERFAMILY	Protein kinase-like (PK-like)	309	620	IPR011009	-
	Tpr3g3524	646	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	23	642	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g3524	Tpr-Chr3	39085575	39097901	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g3524	1	646	Receptor kinase-like Gene Family	AT1G70520	36.006	2.07e-125	384

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tpr3g3524		PK_Tyr_Ser-Thr	1.2e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g3524	-		-	gmx:100813585	965.681