Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3504 ATGGCGAATCAAGATCAAGATGGATTAACTTGTTTCAGTGTTAGCCCTTCAAACTCAATTGGAAATGGAGTTTCTTTGAATTCGGGATCACATTCTGTTACACATATTCAACTCAGCGATCACTTATCTTGCGCGAATGACTATGCTCTTAAGATAAGGAAACCATATACTATAACAAAACACAGAGAAAAATGGACCGATGAAGAACATAACAAGTTCCTAGAAGCCTTCAAGCTGTATGGCCGGGCCTGGCGACGCATTGAAGAACATGTTGGCACAAAGACTGCGGTACAAATTCGAAGTCATGCTCAGAAGTTTTTCTCTAAGGTTCTTCGCGATAAAAGTGAGTATACAACAAAAACTAAGGGCTCAATTGAAATTCCTCCTCCTCGACCCAAACGAAAGCCTGTGCATCCTTATCCTCGGAAGCTAGTTGAGATGACCGATGATAGTAAAGGAATTTCAATCCCGAAAAAGGTAATGAATCCTATTTCTCTGAAGACATCAGATTTTGATCAAGAAAACCAATCTCCCAAATCAGTACTATCTACACCTGGTTCCGAAAGCCTTAGTTCGTCCGATTCAGATACAATAAATGTAAGTTTATCTCCAATATCATCGATTAGCTGTGTTTGCGCAAGTGTTTTTACATCTGATGAAAAAGCCGTTATGAAACTTGAGATTCTCACCAATGAAATAGTTTCTGCTAAAGAAAGCGGCATCATAGAAGAATCGTCTCGTCAAACTCTTAAACTTTTCGGGATGACTCTATTTGTAACCGATACTCGCAGAACATCTTCTCCAACAATTGAGGCATGCAAACCAATACCTATTAACATAGATTTTAGTAAGGTGGAAGGAAAATTGGAACTTCTAGGCAATAATTCACTATGTGAAAAATCAGCTATATCAAAGCTAAGAGTACGTAACAGTGAGACATGA 942 0.3864 MANQDQDGLTCFSVSPSNSIGNGVSLNSGSHSVTHIQLSDHLSCANDYALKIRKPYTITKHREKWTDEEHNKFLEAFKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDKSEYTTKTKGSIEIPPPRPKRKPVHPYPRKLVEMTDDSKGISIPKKVMNPISLKTSDFDQENQSPKSVLSTPGSESLSSSDSDTINVSLSPISSISCVCASVFTSDEKAVMKLEILTNEIVSAKESGIIEESSRQTLKLFGMTLFVTDTRRTSSPTIEACKPIPINIDFSKVEGKLELLGNNSLCEKSAISKLRVRNSET* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3504 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Tpr3g3504 313 PANTHER SWI/SNF COMPLEX-RELATED 23 275 - -
Tpr3g3504 313 SMART sant 61 109 IPR001005 -
Tpr3g3504 313 PANTHER PROTEIN REVEILLE 7-RELATED 23 275 - -
Tpr3g3504 313 Gene3D - 64 110 - -
Tpr3g3504 313 CDD SANT 64 107 IPR001005 -
Tpr3g3504 313 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Tpr3g3504 313 MobiDBLite consensus disorder prediction 118 141 - -
Tpr3g3504 313 MobiDBLite consensus disorder prediction 127 141 - -
Tpr3g3504 313 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Tpr3g3504 313 MobiDBLite consensus disorder prediction 168 195 - -
Tpr3g3504 313 SUPERFAMILY Homeodomain-like 56 109 IPR009057 -
Tpr3g3504 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
Tpr3g3504 313 ProSiteProfiles SANT domain profile. 60 111 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3504 Tpr-Chr3 38845512 38848820 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr3g3504 Myb_DNA-binding 5.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3504 - - gmx:780539 340.117