Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3503 ATGATTAAGGTACACTATTTTTTTTTAGTAAAAAAACAAATACATTTTTCTTCTAGTAAATTGCAGTACACAGTGACACAAGTGTCAGTACTCAAGAACTCAAGTAATAAAAAATTGAACGAAGGTTTGAAAAATGATGAACAAACAAGTTCTTCTAGTTCTATTTACTACTCATTCTTCACTCTCAAATTCTCAACCTCTATAACTAAAAACAAACACAAAATGTCACAGCGTGTGTTAATCTCAATCTCAATTTACATTATTACCCTCCAACTAACTTCATCATCTACTACTTCACATTACTTTTCGCCATCACCACCAGCCACACCATTCTCCGAATCTTCCCCCGAACCACCCTCCTCCACTGTCTCCGATTGGCTCTCCGCTCACGCCACATACTACTCCGCCACTGATGACACCAGAGACGCAGTAGATGGAGCGTGTGGCTACGGAGACACTCACAGAGACGGTTACGGTATAACGGCATCAGCTGCTCTGAGTGAAACTCTATTCGTGCGTGGTCAGATCTGTGGTGCGTGCTTTGAGCTTCGATGTCTTGAGGAGGATGTTCCTTTTGATCGTCGGTGGTGTGTCTCCGGTAAGTCGATTGTTGTGACTGCTACTAATTTCTGTGCTCCGAATTATGGTTTTGATGCGGAGAGTGAAGGTGGACATTGTAATCCTCCTAAACAACATTTTGTGCTTCCGGTTGAAGCTTTTGAGAAGATTGCTATTTGGAAAGGGGGTAATATGCCGGTGAAGTATCGCAGGATAAAGTGCATAAGGGAAGGTGGAATGCGGTTTACGATTACTGGTTCCGGCATCTTCAATTCAGTGCTGATCAGTAATGTGGGTGGCATAGGAGACATTGTTGGTGTCAAAGTTAAAGGTTCAAGAACTGGTTGGATTTCTATGGGTCGGAATTGGGGTCAAAACTGGCATGTAAATGCTTTGCTACAAAACCAACCTCTTTCATTTGAGGTCACTAGTAGTGATGGGGTAACCATTACATCTTACAGTGTAGCTCCCAAGAATTGGAGCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGTCTTAG 1080 0.4231 MIKVHYFFLVKKQIHFSSSKLQYTVTQVSVLKNSSNKKLNEGLKNDEQTSSSSSIYYSFFTLKFSTSITKNKHKMSQRVLISISIYIITLQLTSSSTTSHYFSPSPPATPFSESSPEPPSSTVSDWLSAHATYYSATDDTRDAVDGACGYGDTHRDGYGITASAALSETLFVRGQICGACFELRCLEEDVPFDRRWCVSGKSIVVTATNFCAPNYGFDAESEGGHCNPPKQHFVLPVEAFEKIAIWKGGNMPVKYRRIKCIREGGMRFTITGSGIFNSVLISNVGGIGDIVGVKVKGSRTGWISMGRNWGQNWHVNALLQNQPLSFEVTSSDGVTITSYSVAPKNWSFGQTFEGKQFES* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3503 359 Gene3D - 110 260 IPR036908 -
Tpr3g3503 359 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 145 265 IPR007112 -
Tpr3g3503 359 Pfam Expansin C-terminal domain 266 343 IPR007117 -
Tpr3g3503 359 PANTHER EXPANSIN-A13 106 358 - -
Tpr3g3503 359 SMART dpbb_1 163 255 IPR007112 -
Tpr3g3503 359 Pfam Lytic transglycolase 164 255 IPR009009 -
Tpr3g3503 359 PRINTS Expansin/Lol pI family signature 125 140 IPR007118 GO:0005576
Tpr3g3503 359 PRINTS Expansin/Lol pI family signature 144 162 IPR007118 GO:0005576
Tpr3g3503 359 PRINTS Expansin/Lol pI family signature 167 185 IPR007118 GO:0005576
Tpr3g3503 359 PRINTS Expansin/Lol pI family signature 248 264 IPR007118 GO:0005576
Tpr3g3503 359 PRINTS Expansin/Lol pI family signature 302 316 IPR007118 GO:0005576
Tpr3g3503 359 PRINTS Expansin/Lol pI family signature 340 354 IPR007118 GO:0005576
Tpr3g3503 359 SUPERFAMILY PHL pollen allergen 262 354 IPR036749 -
Tpr3g3503 359 Gene3D - 266 357 IPR036749 -
Tpr3g3503 359 PRINTS Expansin signature 157 171 IPR002963 GO:0009664
Tpr3g3503 359 PRINTS Expansin signature 223 240 IPR002963 GO:0009664
Tpr3g3503 359 PRINTS Expansin signature 240 253 IPR002963 GO:0009664
Tpr3g3503 359 PRINTS Expansin signature 264 276 IPR002963 GO:0009664
Tpr3g3503 359 PRINTS Expansin signature 276 297 IPR002963 GO:0009664
Tpr3g3503 359 PRINTS Expansin signature 311 332 IPR002963 GO:0009664
Tpr3g3503 359 PRINTS Expansin signature 340 356 IPR002963 GO:0009664
Tpr3g3503 359 SUPERFAMILY Barwin-like endoglucanases 123 283 IPR036908 -
Tpr3g3503 359 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 275 354 IPR007117 -
Tpr3g3503 359 PANTHER EXPANSIN-A15 106 358 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3503 Tpr-Chr3 38842313 38844324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3503 125 359 Expansin Gene Family AT3G03220 70.638 4.28e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3503 - - mtr:MTR_3g064510 477.248