Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3502 ATGACAATGGAAGAACATGAAGAAGTTTCCTTGCCAGGAACAGTTCCTTTTGATAGAGCTCTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTCAAGTGTGGTAGTCGAGGAAAGCCGAAGCTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATCTGGTGCTCAGGACAGCAGGAAAAACATTTGCGGTTGAGCGGAGTTACAAAAATTGTTCAAGGACAAGGAAATATAAAGTCTCAGAGACAAAACGAAACCGAAAAGGAATGCCATTCATTTTCACTGATCTATGCTAATGGTGAACATTCTCTTGATCTGATATGCAAGGATAAAGCACAAGCTGCTACTTGGTTTGTTGGCTTGAAAGCTGTGATTTCAAGGTGTCAGCAACCTAAAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGAGTGCAGAGTTGTGTCAGTAGTCCCTCTGGAATTTTACGCCGAAAGAAAAATCTTGGTCTTCTAGATGATACCGCTCAATTTACTCAGGTACATAGCGTATGTGCAAGTCCAACTCTGTCACTTTCAGAAAGGTGTTTTTCTGATGGCATGTCGTATACATCTGATAACTTGTATTCATCGGCATCATCCCTCTCCAGCACTCAGGGAAGAACAGATAGTTCAGTCCCAAGTTCTCCATATATTAATCCAGATATTCATAGCAATACTAAAACATCTCGTTTCGAAAAGGAATACAAGAAGGATTTGTGGTCATATAGATCTATCATGTCTCCTACCACTTCCTCACATGTAGGAAATAGCAATAACAATGTATTGAAGGATGTAATGATATGGGGTGGTGGAATTGGATGCCTTGTAGGGATTGTGAATGAAAGGTTTGTCGAAAATAGTATTTATTCTTTAGTTCCAAAGTTACTCGAATCGACCGCGATGTTAGATGTACAAAATGTAGCTTTAGGAGGAAACCATGCGGCAATAGCTACAAAACAAGGCGAAGTTTATTGTTGGGGTCAAGGGAAGAGGGGAAGGTTAGGGCAAAAAATTGATATGGACATTAGCTCCCCCAAAATAGTTGATTCTCTTGGTGATATTCGTGTAAAAAACGTTGCCTGTGGCGAGTATCACACATGTGCTTTGACGGATTCGGGTGAAGTATATGCGTGGGGGAACGATGTTTCTTGTTCGGATTCGGTTGATGAAGGGAGAATTAGGAGTCAGTGGTTAATACATAAACTTTCTTTACCTGTAGAGGGTATTAGTATTTCAAGTGTTGCTTGTGGAGAATGGCATACCGCGATTGTTTCCAGCTGCGGTCGGTTATTTACATATGGAGATGGTACATTTGGAGTACTTGGACATGGGAATTATCATAGCTTTTCTAGTCCAAAAGAAGTTGAGTCTCTTAAGGGTTTATGTGTGAGGTCTGTAGCTTGTGGAACATGGCATACAGCCGCAATTATCGAAGTCATTGCTGACCGTTTTAAGTACAATACTTCTACCGGTAAGCTGTTTACATGGGGTGATGGAGATGAAGCGAGGCTTGGTCATGCCGATAACGGAAACAAACTTGTACCAACATGTGTTTCACAGCTTGTCGATTACGATTTTGTTCAAGTATCTTGCGGAAGAATGTTGACTCTCACACTTACTAATATGGGGAAAGTTTTTGCTATTGGAAGTGCAAAATATGGACAATTGGGAAATCCACATGTTAAGGATAGAGCCGTTCTGGTTGAAGGTATGCTTAAACAAGAGTATGTAAAAAAGATATCTTGTGGCTCATATCATGCTGCTGTTTTGACATCTTCAGGAAGTGTCTACACATGGGGAAAAGGTGAAAACGGACAACTTGGGCTAGGCGATACCGATAACCGATACACACCTTGTTTTGTTGAGGCACTAAGAGATAGGCAGGTAGATACAATAACTTGTGGTCCAAGTTTCACAGTTGCAGTATGTTTGCATAAACCTATTTCAATTAGTGACCAATCAAGTTGTAGTGGTTGTAGGTTAGCATTTGGTTTCACAAGGAAGAAACATAACTGTTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAAAAGGTTACCGATGCGTCTCTAGCCCCGGATAAGAGCAAGGCCTTTCGTGTTTGTGATTCGTGCTTTGATAGAAAGCAAGGAAGTAGTAGTACACATTCAGTTACGGACTCATTAAAGTCTATAAATTGTAACGATCGGGAGATACTAAAGCATCATCAGATACTAAAGCGTCATCAGAGTAAAATTGGTGATTTCACCGAAGATAGAGGCGAAACAAATGTGACAAATAGTCCTTTATTGTCTGTTAGCCAATCGTGTTACCGGAAAAGCATGCCAAGTGGAAGGAAGGTTTGGAAAAACCAACAAGAAAGCCAACACGATTTAGAAGATAGTTCTTCTAAGTTAGGTAGTGTGCCACAATGTGGACAAGTTCCATGTTCAGCACAATTTGGAATCAATTATACACAAAATTCAGTTGTACATGAAACAGATACATCAAAGTCTGATACGTTGCTCATAGAAGAAGTTCACAGGCTGAGAGCTGAGGCTAAGAGACTTGAAAAGCAATGTGAGCTCAAAGACAATGAAATACTGGAGTGTCAACAAAAAGTTCAGGAGAGTTGGTCTGTAGCCAAAGAGGAAGCTGCTAAGTGCAAAGCAGCAAAAGATGTTATAAAAGTTTTGGCATTAAGGCTTCATACATTATCAGGAAAAGATAATCATGGACTAGAACAAAAGTCTGGACTGCAAGAATTTCATCCAAATTTGGCACCTATACAAACAGATATGAATAGTCCAAGAAATGCCAATATGGATAGTTTATCAAATTCTCCTATAATATTCTCTAGTGCATTAAAGTCCAAATTTGGGAGAAGTATCCTTCTCAAAAATGACAAGTTGATGGAGAAGACTAATCTCACTAAAGCAGAATCTCAACAAAACACTGCAGATGGTTTGAAGATGGTTGAATGGGTCGAACAATATGAGAATGGTGTTTACATAACATTGACAAGCTCGCCGAGTGGAGAAAAAGGAGTTAAGCGTGTGAGATTTAGCCGGAAGCGATTTTCGCAGAAAGAAGCAGAAAAGTGGTGGGAAGAGAATCAAACAAAAGTGTATAATAAGTATGAAATTGAAGGATTTTAA 3174 0.3967 MTMEEHEEVSLPGTVPFDRALEQAIVSIKKGAYLLKCGSRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGQGNIKSQRQNETEKECHSFSLIYANGEHSLDLICKDKAQAATWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPSGILRRKKNLGLLDDTAQFTQVHSVCASPTLSLSERCFSDGMSYTSDNLYSSASSLSSTQGRTDSSVPSSPYINPDIHSNTKTSRFEKEYKKDLWSYRSIMSPTTSSHVGNSNNNVLKDVMIWGGGIGCLVGIVNERFVENSIYSLVPKLLESTAMLDVQNVALGGNHAAIATKQGEVYCWGQGKRGRLGQKIDMDISSPKIVDSLGDIRVKNVACGEYHTCALTDSGEVYAWGNDVSCSDSVDEGRIRSQWLIHKLSLPVEGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEVIADRFKYNTSTGKLFTWGDGDEARLGHADNGNKLVPTCVSQLVDYDFVQVSCGRMLTLTLTNMGKVFAIGSAKYGQLGNPHVKDRAVLVEGMLKQEYVKKISCGSYHAAVLTSSGSVYTWGKGENGQLGLGDTDNRYTPCFVEALRDRQVDTITCGPSFTVAVCLHKPISISDQSSCSGCRLAFGFTRKKHNCYNCGLLFCRACSSKKVTDASLAPDKSKAFRVCDSCFDRKQGSSSTHSVTDSLKSINCNDREILKHHQILKRHQSKIGDFTEDRGETNVTNSPLLSVSQSCYRKSMPSGRKVWKNQQESQHDLEDSSSKLGSVPQCGQVPCSAQFGINYTQNSVVHETDTSKSDTLLIEEVHRLRAEAKRLEKQCELKDNEILECQQKVQESWSVAKEEAAKCKAAKDVIKVLALRLHTLSGKDNHGLEQKSGLQEFHPNLAPIQTDMNSPRNANMDSLSNSPIIFSSALKSKFGRSILLKNDKLMEKTNLTKAESQQNTADGLKMVEWVEQYENGVYITLTSSPSGEKGVKRVRFSRKRFSQKEAEKWWEENQTKVYNKYEIEGF* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3502 1057 Gene3D - 20 137 IPR011993 -
Tpr3g3502 1057 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 660 722 IPR017455 -
Tpr3g3502 1057 SMART fyve_4 654 723 IPR000306 GO:0046872
Tpr3g3502 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 603 652 IPR000408 -
Tpr3g3502 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 553 600 IPR000408 -
Tpr3g3502 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 438 486 IPR000408 -
Tpr3g3502 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 331 379 IPR000408 -
Tpr3g3502 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 501 548 IPR000408 -
Tpr3g3502 1057 PRINTS Chromosome condensation regulator RCC1 signature 314 327 IPR000408 -
Tpr3g3502 1057 PRINTS Chromosome condensation regulator RCC1 signature 333 349 IPR000408 -
Tpr3g3502 1057 PRINTS Chromosome condensation regulator RCC1 signature 383 399 IPR000408 -
Tpr3g3502 1057 PRINTS Chromosome condensation regulator RCC1 signature 424 440 IPR000408 -
Tpr3g3502 1057 PRINTS Chromosome condensation regulator RCC1 signature 440 454 IPR000408 -
Tpr3g3502 1057 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Tpr3g3502 1057 PRINTS Chromosome condensation regulator RCC1 signature 599 620 IPR000408 -
Tpr3g3502 1057 SUPERFAMILY FYVE/PHD zinc finger 661 726 IPR011011 -
Tpr3g3502 1057 CDD PH_PLC_plant-like 19 131 - -
Tpr3g3502 1057 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 476 486 IPR000408 -
Tpr3g3502 1057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 732 IPR013083 -
Tpr3g3502 1057 ProSiteProfiles BRX domain profile. 998 1053 IPR013591 -
Tpr3g3502 1057 CDD FYVE_like_SF 665 718 - -
Tpr3g3502 1057 PANTHER F12P19.9 PROTEIN 22 1053 - -
Tpr3g3502 1057 Pfam Transcription factor regulating root and shoot growth via Pin3 999 1052 IPR013591 -
Tpr3g3502 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 383 437 IPR000408 -
Tpr3g3502 1057 Gene3D - 397 660 IPR009091 -
Tpr3g3502 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 438 489 IPR000408 -
Tpr3g3502 1057 SUPERFAMILY RCC1/BLIP-II 274 656 IPR009091 -
Tpr3g3502 1057 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 590 600 IPR000408 -
Tpr3g3502 1057 Coils Coil 845 879 - -
Tpr3g3502 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 331 382 IPR000408 -
Tpr3g3502 1057 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 22 1053 - -
Tpr3g3502 1057 Gene3D - 233 396 IPR009091 -
Tpr3g3502 1057 SUPERFAMILY PH domain-like 21 130 - -
Tpr3g3502 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 604 655 IPR000408 -
Tpr3g3502 1057 Pfam FYVE zinc finger 662 720 IPR000306 GO:0046872
Tpr3g3502 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
Tpr3g3502 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 603 IPR000408 -
Tpr3g3502 1057 Pfam Pleckstrin homology domain 22 128 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3502 Tpr-Chr3 38803011 38810744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3502 993 1057 Major Intrinsic Protein MIP AT1G31880 44.615 6.09e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3502 - - gmx:100794953 1590.47