Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3493 ATGGATCAAGTGAGAGGAAGTAATAAACCTTCTAGCTCTACAACCAAAGTTGAAAGAAGACTGGTTGAGAAAAACAGAAGAAATCAGATGAAGATCCTTCACTCCAAACTCAACTCTCTTCTCCCTAACTATAATCCCAAGGAATTGGCGTTACCGTTACCGGACCAAGTAGACGAGGCGATAAACTACATAAAGAGTTTAGAGGCAAATGTGAATATGGCTAAGGAGAAAAAAGAGAGATTATTAGAGGGAAAGAAGAAAAGATCACGCAAATATTTTTCGGATCTACCAAAATTGTCACGTTTTGAAATTCACGAAATTGGTTCTTCTCTACAAATCATTCTCACTTGTGGGTTAGATAACCAGTTCATTTTCTATGAAATCATTCGCGTGTTACATGAAGAGAATATAGACGTTAGAAGTATCAATTCCTCGACTGTTGGAGACAATTCACTCATTCATGTCGTGCATGCTGAGATTCCTCAATCTTGTGTTCAATTTGGAGCAACAAAAGTGAGTGAGAGATTGAAAAGGTTTGTGAATGGATCCTGCAGTGATGTGAAAATGCAGCCTGATGAGTTGTGGGATTTTGAAATTGGAACTGATTTGTGGGGTTTAATTTCTAGTTAG 630 0.3778 MDQVRGSNKPSSSTTKVERRLVEKNRRNQMKILHSKLNSLLPNYNPKELALPLPDQVDEAINYIKSLEANVNMAKEKKERLLEGKKKRSRKYFSDLPKLSRFEIHEIGSSLQIILTCGLDNQFIFYEIIRVLHEENIDVRSINSSTVGDNSLIHVVHAEIPQSCVQFGATKVSERLKRFVNGSCSDVKMQPDELWDFEIGTDLWGLISS* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3493 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 67 IPR011598 GO:0046983
Tpr3g3493 209 MobiDBLite consensus disorder prediction 1 25 - -
Tpr3g3493 209 MobiDBLite consensus disorder prediction 1 15 - -
Tpr3g3493 209 Gene3D - 5 97 IPR036638 GO:0046983
Tpr3g3493 209 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 11 187 - -
Tpr3g3493 209 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Tpr3g3493 209 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 187 IPR015660 GO:0003700|GO:0006357
Tpr3g3493 209 Coils Coil 57 84 - -
Tpr3g3493 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 83 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3493 Tpr-Chr3 38658340 38659565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3493 9 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.267 8.10e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g3493 HLH 0.00016 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3493 - - gmx:100817883 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3493 3 38658340 38659565 Tpr3g3493 3 38658340 38659565 ECH