Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3488 ATGGCACTTTCCATTAAAAAAGAGTTGTTTCCTCAACAATTTTCAACCAAGATTAGGGTTCTTATGATTGATCATGATATCAATCTTCTTAATGCTTTTGAGAAAATATGCTTTCAATTTCATTACTCAGTCAAGACATGCTCTAAGGCTTCGGATGCTTTGAATCTTTTGATGGAAAAAAAGAATAGTTTTGACTTGGTACTAATTGAAGCTAAAATGCCTGATATGAATTCATATGAATTTTTGCAACATGTTACACAACACATCAATATCCCTGTTATTATGATGTGTGCTGATAACACAAGAAGTGCCGTGAAGAAGGCCATTGACGATGGAGCTTGTGATTATTGGATCAAACCTTTGACTGAGAATCTAATCCAAAACATGTGGCAACATGTTGCAAGGAAAATTTGGAAACAAAATAAAAACCTAAAATTAAGCGACGAATTGGAGGTTGAAGTCGGTATGAGAAAAGAGGAGAGATATGATTCAAATTTGTTGTTGATTGATCCAAAAATAGGAGTGACCGACGATTCAAATTTGCCTTTAATTGATCCAAGAATAGGAGTGATCGACACTAGTGTGAAACAAGAGAGTGTTGAAACGAATAACGTCAAACCTGAATCATCAACAAAGAAGACACGTATTACATGGACACCAGAGTTGCATAAAAAATTTGTTAGGGCTGTGATGGAACTCAATGTTGATAAGGCAGTACCCAAAAAAATTCTTGCAAAGATGAATGAGTCTGAATTGACAAAACAACATGTAGCTAGTCATCTACAGAAATATAGGCTTCATTTGAAGGAAGGAGGAGAGACAAAGAAACAAAAAAAACAGACAGAAGCTACTACAAAATTTAAGAGTTCACCAAATGGATCTTCAGAATTTGATTTTCAAGCTTATGATGATTCTACTTCTCATGTTGTTCCCAACAATTTCATACCAACAAATTTTCCCCACCAAGCCAACACTTTCATTCCTTCTGAATCTAAGAATATGGTTAATGCAGCTGCAGCTGCAGTTAATTTTTATCAAACTGAATTTGAGGAAGAAACTAGTTCAGCTTCTATCAATCAGCATAATCACATTGGATTTGAGACTAATTCTATTATTAATCCATCATTTATAAATACTCTTAATCTGCATTTTCCAAATCCGCATGTTCGAAATATGTTCTTAGCCCCGCCCCCTGGCATAATCTCTCACCAAATTCCAATGACTCAACCTCTTCCAATGATTTTTGACAATTCAATATCTTCGCGCGGTGTTTCGCATTTTTGTGCTGCTGATAATATCAGTGATACTAATTCCAATACAACAAGGTTGGAGGAGCCACAATCTACTATCTATGCTTCAACAAAGGATCATCCTTTCTCTTGA 1383 0.3529 MALSIKKELFPQQFSTKIRVLMIDHDINLLNAFEKICFQFHYSVKTCSKASDALNLLMEKKNSFDLVLIEAKMPDMNSYEFLQHVTQHINIPVIMMCADNTRSAVKKAIDDGACDYWIKPLTENLIQNMWQHVARKIWKQNKNLKLSDELEVEVGMRKEERYDSNLLLIDPKIGVTDDSNLPLIDPRIGVIDTSVKQESVETNNVKPESSTKKTRITWTPELHKKFVRAVMELNVDKAVPKKILAKMNESELTKQHVASHLQKYRLHLKEGGETKKQKKQTEATTKFKSSPNGSSEFDFQAYDDSTSHVVPNNFIPTNFPHQANTFIPSESKNMVNAAAAAVNFYQTEFEEETSSASINQHNHIGFETNSIINPSFINTLNLHFPNPHVRNMFLAPPPGIISHQIPMTQPLPMIFDNSISSRGVSHFCAADNISDTNSNTTRLEEPQSTIYASTKDHPFS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3488 460 Gene3D - 209 270 - -
Tpr3g3488 460 CDD REC_typeB_ARR-like 20 134 - -
Tpr3g3488 460 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Tpr3g3488 460 MobiDBLite consensus disorder prediction 268 283 - -
Tpr3g3488 460 SUPERFAMILY Homeodomain-like 211 269 IPR009057 -
Tpr3g3488 460 MobiDBLite consensus disorder prediction 268 292 - -
Tpr3g3488 460 Gene3D - 16 153 - -
Tpr3g3488 460 Pfam Myb-like DNA-binding domain 217 265 IPR001005 -
Tpr3g3488 460 MobiDBLite consensus disorder prediction 438 460 - -
Tpr3g3488 460 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 366 IPR045279 GO:0009736
Tpr3g3488 460 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Tpr3g3488 460 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 10 366 - -
Tpr3g3488 460 SMART REC_2 18 130 IPR001789 GO:0000160
Tpr3g3488 460 SUPERFAMILY CheY-like 17 167 IPR011006 -
Tpr3g3488 460 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 267 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3488 Tpr-Chr3 38559029 38561342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3488 13 270 Response Regulator Gene Family AT2G25180 36.822 1.86e-45 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr3g3488 Response_reg 1.3e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3488 - - cam:101491966 249.595