Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3471 ATGTATGGTTCTGATTCTGATTCCGATGATCATCGGAGAAATGAAGAACAATTTGTTGAACTGAAACCTGAAGTTGTTGAATTGAGAACTTTGCATACAAGAGAAGAAGAATTGTATTTTTATGATGCTTTTAGTTATCCTTGGGAGAAAGATAAACATTATAAAATGGTTTATCAATTGGAGAAAAAGTATTTCCCTCATCAGTGTTTGGATAAATCTTTTCTTAAACCAGGTCAATCTAATCCAGTTTCCAATTTTTTAAATTCCAAAAATTCCAATGCAAATGTTAGGAACAAAAAAGTTGGTGTTTTTGGTGGTGTTGGTGGTGTTGTGGAGGATAAAGATGAGGTTGGTGATAACAAGTTGGTGTTTTTTGAGGAGAATGTGAAAGGGGAAGATGATAGAGAAAAAGAAAAGGGTAAGAAGGGTGAGAAGAAGGTTGAAGAGTTTTTTAAGGGTTTGAAGAAAGATGTTGAAATTGTAGAGCCAGTTTTTTCTTCAAGGAGGACTGGTCTTCCTCCTGTTTGGGATAGTCAACATGGGACAGTGCTTTTGATTAACAAACCTAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTTCGCCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCCGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAATCAACAAAACTGGTGGATAGGTAA 714 0.3655 MYGSDSDSDDHRRNEEQFVELKPEVVELRTLHTREEELYFYDAFSYPWEKDKHYKMVYQLEKKYFPHQCLDKSFLKPGQSNPVSNFLNSKNSNANVRNKKVGVFGGVGGVVEDKDEVGDNKLVFFEENVKGEDDREKEKGKKGEKKVEEFFKGLKKDVEIVEPVFSSRRTGLPPVWDSQHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKLVDR* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3471 237 Gene3D Pseudouridine synthase 176 237 - -
Tpr3g3471 237 Pfam TruB family pseudouridylate synthase (N terminal domain) 202 236 IPR002501 GO:0006396
Tpr3g3471 237 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 156 236 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr3g3471 237 SUPERFAMILY Pseudouridine synthase 170 236 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3471 Tpr-Chr3 38310679 38312472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3471 183 235 NAC Transcription Factor Family AT3G57150 45.283 1.23e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3471 K03177 - gmx:100793939 281.567