Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3470 ATGGTGAAACCAATATTTCTAACACACCATATCCGTTTCATAACAACCTCTTCTTCTTCTTCTTCTTCTTCTAGATTCTTCCATCCATTCTCCATCTCTAAATCACCACTCCGATTCCTCTCCACAACCCCATACCCACTCCAATACCAACTTATCATTAACCGCCCCGACCTCCCTAAACCCAACCCTCACTGTCGAACCCAAAAACCTAACGCTTCACCCGAACCAACCCAACCCGACTCTCTCCAAAGCTGGGCCGATGATAAACTACTAACAACCGAACCCGGTTCATCTGAACTTGATAAAGCCAAGAGGAAATACTATAACAAAAGGAGGAAGAGAATGTATGGTTCTGATTCTGATTCCGATGATCATCGGAGAAATGAAGAACAATTTGTTGAACTGAAACCTGAAGTTGTTGAATTGAGAACTTTGCATACAAGAGAAGAAGAATTGTATTTTTATGATGCTTTTAGTTATCCTTGGGAGAAAGATAAACATTATAAAATGGTTTATCAATTGGAGAAAAAGTTTTTCCCTCATCAGTGTTTGGATAAAGCTTTTCTTAAACCAGGTCAATCTAATCCAGTTTCCAATTTTTCAAATTCCAAAAATTCAAATGCAAATGTTAGGAACAAAAAAGTTGGTGTTTTTGGTGGTGTTGGTGGTGTTGTGGAGGATAAAGATGAGGTTGGTGATAACAAATTGGTGTTTTTTGAGGAGAATGTGAAAGGGGAAGAAGATAGAGAAAAAGAAAAGGGTAAGAAGGGTGAGAAGAAGGTTGAAGAGTTTTTTAAGGGTTTGAAGAAAGATGTTGAAATTGTAGAGCCATTTTTTTCTTCAAGGAGGACTGGTCTTCCTCCTGTTTGGGATAGTCAACATGGGACAGTGCTTTTGATTAACAAACCTAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTTCGCCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCCGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAATCAACAAAACTGGTGGATAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCCATGTTTTCTGCTATTAAAGTTGGAGGTGAAAAGATGTACGACAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCGCCTAGACGAATTTCAATTTTCCAATTTGACATAGAGCGTAGCTTGGATGACAGGCAAAATTTGATTTTTAGAGTGACTTGTTCTAAAGGAACATATATTCGGTCACTCTGTGCAGATTTCGGAAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGACAATATTTAGCAGATGATGCATGGGACTTTCAAGAACTGGAAGAGGCTATCACCAAAACTTATCTTTAA 1545 0.4006 MVKPIFLTHHIRFITTSSSSSSSSRFFHPFSISKSPLRFLSTTPYPLQYQLIINRPDLPKPNPHCRTQKPNASPEPTQPDSLQSWADDKLLTTEPGSSELDKAKRKYYNKRRKRMYGSDSDSDDHRRNEEQFVELKPEVVELRTLHTREEELYFYDAFSYPWEKDKHYKMVYQLEKKFFPHQCLDKAFLKPGQSNPVSNFSNSKNSNANVRNKKVGVFGGVGGVVEDKDEVGDNKLVFFEENVKGEEDREKEKGKKGEKKVEEFFKGLKKDVEIVEPFFSSRRTGLPPVWDSQHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYLADDAWDFQELEEAITKTYL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3470 514 MobiDBLite consensus disorder prediction 111 130 - -
Tpr3g3470 514 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 270 512 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr3g3470 514 Gene3D Pseudouridine synthase 290 513 - -
Tpr3g3470 514 SUPERFAMILY Pseudouridine synthase 296 509 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr3g3470 514 CDD PseudoU_synth_EcTruB 297 508 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr3g3470 514 Pfam TruB family pseudouridylate synthase (N terminal domain) 316 466 IPR002501 GO:0006396
Tpr3g3470 514 TIGRFAM TruB: tRNA pseudouridine(55) synthase 296 505 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr3g3470 514 MobiDBLite consensus disorder prediction 113 130 - -
Tpr3g3470 514 Pfam tRNA pseudouridylate synthase B C-terminal domain 467 510 IPR032819 -
Tpr3g3470 514 Hamap tRNA pseudouridine synthase B [truB]. 294 514 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3470 Tpr-Chr3 38302892 38310640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3470 297 488 NAC Transcription Factor Family AT3G57150 32.812 6.30e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3470 K03177 - gmx:100793939 645.58