Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3466 ATGCCTCCAAAATATAATTCTATTTCTGAAATTTCTCCATCCAAAGAAACATGGAATGTATTGGTTAGAATTGTTCGCATGTGGTTTGTTAAAGATATGAATAGAGATGCGCTGCCGTATTCTTTAGAAATGGTTTTGATGGATAAGAAGGGTGAAAAGATCCATGCAACAGTTCGAAGAACATTAATTTACAAATATGAAAAGGAACTCACTGAGGGTCATGTGTATTCCATAAGCAACTTTAGTGTTGCCACTAATGTGGGATCATATAGAACCACCAATCATGCCTATAAAATTAATTTTCAATTTGGAACTAAAATCAAAAAATTTGATGACAAGTTGATACCTGCTAATATATACATGATCAGTGAACCTCATAAGATTTTTAATGATAACTATGATACCGATTATTTGATAGATGTGATGGGAGTCTTGAAAGCTGTGGGTGTTGAAAAGGTTTATTCTCGAAATGGAAGCGAATCAAAGATGATTCCTATATATATATATTTTAATAACTTCTATTTCAAAGTTACACTCTTTGGACCTTATGCGGACGAGTTGAACGCTTTTATCGCATCTGGTGAAGCAGATAATGCTGTCGTTGCTGTTTTGTTGGCCAAAGTCAAAATGTTCCAAGGTCAACCAACTATTCAAAACACCATATATGCCACTAAACTGGTTTTCAATCCTGTTTACACATCTGTCGTTGATCTCAAGAAAAGGATGCTTGGGAAAAGTGCTACTCCATCACCTGGTATTTCTCTATTAAAAGATACTTCTAAAGTTAGCAATGAGGATGATTTTCTCAATTTGACGCCAATGGCAACTATTGAGGGAGTTAAGGATTGTAGTGTGGAAAAGACATTTGCTGTATTTGGTACGGTGAAGTTTATCGATGGTTCTGAATGGTGGTACACTGCGTGCACCTGTAATAAAAAAGTTTATCCAGATGAGCGTATGTACTTTTGTCCTAAGTGCAACAAGCATGTCATCAACGTCTCTCCAAGGTACATGATTAAGGTCAAAGTTATTGACCATACTGATTCTGCTACCTTTCTCATTTTTGATCGTGATGCTACCGATCTATTCAATAAATCTTGTGCTGATATGATCGAAGCTTTTGGGATGGGTAATTTGGCCGATATTCTAGAAGAGATTGGTGATCTGGTTGATAAGTCATATCTTTTTAAGGTTGAAACCAATGTTGATCCTTCTGGCATGTACGAAAAATCTTTTAAGGTCAAGAAGATTGTGGCCGACCCTGTTTTGATTGAAAAGTTCAAAGCTAAATATGTAGAATCTTTGGTTAGTGAACCGTATAAAGTATCGTTTTTTAATAAAGTTAAACATTAA 1353 0.3533 MPPKYNSISEISPSKETWNVLVRIVRMWFVKDMNRDALPYSLEMVLMDKKGEKIHATVRRTLIYKYEKELTEGHVYSISNFSVATNVGSYRTTNHAYKINFQFGTKIKKFDDKLIPANIYMISEPHKIFNDNYDTDYLIDVMGVLKAVGVEKVYSRNGSESKMIPIYIYFNNFYFKVTLFGPYADELNAFIASGEADNAVVAVLLAKVKMFQGQPTIQNTIYATKLVFNPVYTSVVDLKKRMLGKSATPSPGISLLKDTSKVSNEDDFLNLTPMATIEGVKDCSVEKTFAVFGTVKFIDGSEWWYTACTCNKKVYPDERMYFCPKCNKHVINVSPRYMIKVKVIDHTDSATFLIFDRDATDLFNKSCADMIEAFGMGNLADILEEIGDLVDKSYLFKVETNVDPSGMYEKSFKVKKIVADPVLIEKFKAKYVESLVSEPYKVSFFNKVKH* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3466 450 Gene3D - 259 435 IPR012340 -
Tpr3g3466 450 Pfam Replication factor-A C terminal domain 289 403 IPR013955 -
Tpr3g3466 450 Gene3D - 5 124 IPR012340 -
Tpr3g3466 450 SUPERFAMILY Nucleic acid-binding proteins 273 406 IPR012340 -
Tpr3g3466 450 CDD RPA1_DBD_A_like 22 107 - -
Tpr3g3466 450 PANTHER REPLICATION FACTOR A 1, RFA1 20 371 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr3g3466 450 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 371 - -
Tpr3g3466 450 SUPERFAMILY Nucleic acid-binding proteins 4 112 IPR012340 -
Tpr3g3466 450 SUPERFAMILY Nucleic acid-binding proteins 132 241 IPR012340 -
Tpr3g3466 450 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Tpr3g3466 450 CDD RPA1_DBD_B_like 140 242 - -
Tpr3g3466 450 CDD RPA1_DBD_C 289 426 IPR013955 -
Tpr3g3466 450 Gene3D - 125 245 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3466 Tpr-Chr3 38250104 38252676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3466 2 370 Core DNA Replication Machinery Family AT4G19130 22.646 1.61e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3466 - - mtr:MTR_2g048560 611.683