Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3456 ATGGTGGCGGCAGTAGCAGCAGCATCATACGAAGACACTCGCCGGAAAAGAATGGAAGAAAACAAAAAGAGAATGGAAGCTCTCAATCTTCATCAACTTTCTCAATCCCTTCACAAATCCTCTTCCCCTATTTCAAAACCATCTCCTTCCAAACCTCGCACTGTCCGCAAAGAGCTTGTTGTTGTCCGACGCTCCGGCCGTGTCGCCAACTTGCCTGCTCCCATTTACAAAGAAGTTCTTATTGATCGCGTCATACTACCTAGAAATCGAATTTCAAGAGGAGGTTATAATATGTACAGAGATTATTCGAAGCGAGTGTATGCTTCCGATGAAGCTAGAGAGGAAGCATTGGAAAAGGCAGAAAAGTTGCAATCCGATTTAGATTCCGATCATCCGATTTTTATTAAGTCGATGCTTCAATCTCATGTAACTGGTGGATTCTGGCTGGGCCTTCCAACACATTTCTGCAGGACACACCTTCCAACACGGGACGAAGCGATGACTTTAATTGATGAGGATGGGGAGGAGTCTCCAACCACATATTTGGCTCATAAAAGAGGACTTAGCGCTGGGTGGAGAGGTTTTGCTATTGCTCATAACCTTGTTGATGGAGACGCTTTAATTTTTGAGTTAGTTAATCGCACTACATTCAAGGTGTACATTATTAGAGTGAATGATCCTTCGGAGGGTAAACAGCTCGAATGA 705 0.4397 MVAAVAAASYEDTRRKRMEENKKRMEALNLHQLSQSLHKSSSPISKPSPSKPRTVRKELVVVRRSGRVANLPAPIYKEVLIDRVILPRNRISRGGYNMYRDYSKRVYASDEAREEALEKAEKLQSDLDSDHPIFIKSMLQSHVTGGFWLGLPTHFCRTHLPTRDEAMTLIDEDGEESPTTYLAHKRGLSAGWRGFAIAHNLVDGDALIFELVNRTTFKVYIIRVNDPSEGKQLE* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3456 234 Gene3D - 108 227 IPR015300 -
Tpr3g3456 234 Pfam B3 DNA binding domain 134 223 IPR003340 GO:0003677
Tpr3g3456 234 MobiDBLite consensus disorder prediction 28 49 - -
Tpr3g3456 234 ProSiteProfiles B3 DNA-binding domain profile. 134 225 IPR003340 GO:0003677
Tpr3g3456 234 PANTHER B3 DOMAIN-CONTAINING PROTEIN 5 229 - -
Tpr3g3456 234 MobiDBLite consensus disorder prediction 10 27 - -
Tpr3g3456 234 SMART B3_2 134 225 IPR003340 GO:0003677
Tpr3g3456 234 SUPERFAMILY DNA-binding pseudobarrel domain 127 225 IPR015300 -
Tpr3g3456 234 MobiDBLite consensus disorder prediction 1 54 - -
Tpr3g3456 234 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 229 IPR044837 -
Tpr3g3456 234 CDD B3_DNA 132 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3456 Tpr-Chr3 38117864 38121651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3456 9 226 B3 DNA Binding Superfamily AT3G19184 58.559 6.27e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr3g3456 B3 1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3456 - - gmx:100794327 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3456 3 38117864 38121651 Tpr3g3456 3 38117864 38121651 ECH